Non-Coding RNA Search

Pig1-66G19

Sequence:


               
               GCGGAGCCCCCGAGGGGGGACCGCTCCCCACCGCACCAAGCCCGAGGCTATGGCCTGCCT
CCATGAGACCCGCACACCCTCTCCTTCCTTTGGGGGTTTCGTGTCCACGTTAAGCGAGGC
GTCCATGCGCAAGCTGGACCCAGACACTTCCGACTGCACCCCCGAGAAGGACCTGGCGCC
TACCCAGTGTGTACTTCGAGATGTCGTGCCGCTCGGGGGGCAGGGCGGGGGCGGGCCCAG
CCCCTCCCCAGGTGGAGAGCCGCCCCCTGAGCCTTTTGCCAACAGTGTCCTGCAGCTCCA
CGAGCAGGATGCAGGGGGCCCAGGGGGAGCCGCTGGGTCCCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGAGCCCCCGAGGGGGGACCGCTCCCCACCGCACCAAGCCCGAGGCTATGGCCTGCCT
CCATGAGACCCGCACACCCTCTCCTTCCTTTGGGGGTTTCGTGTCCACGTTAAGCGAGGC
GTCCATGCGCAAGCTGGACCCAGACACTTCCGACTGCACCCCCGAGAAGGACCTGGCGCC
TACCCAGTGTGTACTTCGAGATGTCGTGCCGCTCGGGGGGCAGGGCGGGGGCGGGCCCAG
CCCCTCCCCAGGTGGAGAGCCGCCCCCTGAGCCTTTTGCCAACAGTGTCCTGCAGCTCCA
CGAGCAGGATGCAGGGGGCCCAGGGGGAGCCGCTGGGTCCCCT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               210-343, - strand, RNAz p=0.984315

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               210-343, - strand, RNAz p=0.984315

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               249-339, + strand, RNAmicro p=0.993978
               

               
               254-344, - strand, RNAmicro p=0.991918

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               249-339, + strand, RNAmicro p=0.993978
               

               
               254-344, - strand, RNAmicro p=0.991918

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               13-343, gnl|bosTau2|chr5 (18964278-18964610)
               

               
               13-343, gnl|Hg17|chr12 (52167481-52167149)
               

               
               13-343, gnl|Mm7|chr15 (102491727-102491398)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               13-343, gnl|bosTau2|chr5 (18964278-18964610)
               

               
               13-343, gnl|Hg17|chr12 (52167481-52167149)
               

               
               13-343, gnl|Mm7|chr15 (102491727-102491398)

	249-339, + strand, RNAmicro p=0.993978
	254-344, - strand, RNAmicro p=0.991918

	13-343, gnl\|bosTau2\|chr5 (18964278-18964610)
	13-343, gnl\|Hg17\|chr12 (52167481-52167149)
	13-343, gnl\|Mm7\|chr15 (102491727-102491398)