Pig1-66I07
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GAGCAGAGGAGCCTGCCGGGCCTCAGCCAGCCATCCAGTGAGCAGGCTCCTTCTGTGAGA
AGCTGCTGCCAACCTGGACATGGCCTCAGGGTCTTGTGGGCTGGGACAGGGAGGCGCACA
GACAGATGTTAACACTTTCCCGTGTGTAGATATGTACAGCCAAAGGGTTGTGTAAATGTT
CTGCAAAAGTGGGTCTGTACAGAGTGAGAGCTATTTATTTTGTGCAGAGAAAAACATCTG
GAGGGATGGGACCTTCAGGGTTTATTCTTATTTAAGATGTAGCTTTTTGTTGTTGTTTCA
GGCGTTATGTATAAAGCGACGATTATTTTATGG
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Blue-coloured subsequences are predicted RNA structures by RNAz
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GAGCAGAGGAGCCTGCCGGGCCTCAGCCAGCCATCCAGTGAGCAGGCTCCTTCTGTGAGA
AGCTGCTGCCAACCTGGACATGGCCTCAGGGTCTTGTGGGCTGGGACAGGGAGGCGCACA
GACAGATGTTAACACTTTCCCGTGTGTAGATATGTACAGCCAAAGGGTTGTGTAAATGTT
CTGCAAAAGTGGGTCTGTACAGAGTGAGAGCTATTTATTTTGTGCAGAGAAAAACATCTG
GAGGGATGGGACCTTCAGGGTTTATTCTTATTTAAGATGTAGCTTTTTGTTGTTGTTTCA
GGCGTTATGTATAAAGCGACGATTATTTTATGG
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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
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109-316, HUMHBC4827 Human pancreatic islet Homo sapiens cDNA, mRNA sequence
(dbj|D83866.1|), blast E-value=0, identity=90.87% |
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116-316, 7n77c05.x1 NCI_CGAP_Ov18 Homo sapiens cDNA clone IMAGE
(gb|BF116084.1|), blast E-value=0, identity=92.54% |
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116-316, RC5-OT0099-220101-011-E05 OT0099 Homo sapiens cDNA, mRNA sequence
(gb|BI042456.1|), blast E-value=0, identity=92.54% |
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109-316, K-EST0072944 S22SNU16n1 Homo sapiens cDNA clone S22SNU16n1-23-F12
(gb|BM792645.1|), blast E-value=0, identity=92.31% |
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86-316, est_t_truncatus529 HML_TuTr_IL-2 Tursiops truncatus cDNA, mRNA
(gb|DV468118.1|), blast E-value=0, identity=93.94% |
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43-316, sh2P0030N06_F.ab1 adult sheep fracture callus 7d Ovis aries cDNA,
(gb|DY498898.1|), blast E-value=0, identity=86.86% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
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109-316, HUMHBC4827 Human pancreatic islet Homo sapiens cDNA, mRNA sequence
(dbj|D83866.1|), blast E-value=0, identity=90.87% |
|
116-316, 7n77c05.x1 NCI_CGAP_Ov18 Homo sapiens cDNA clone IMAGE
(gb|BF116084.1|), blast E-value=0, identity=92.54% |
|
116-316, RC5-OT0099-220101-011-E05 OT0099 Homo sapiens cDNA, mRNA sequence
(gb|BI042456.1|), blast E-value=0, identity=92.54% |
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109-316, K-EST0072944 S22SNU16n1 Homo sapiens cDNA clone S22SNU16n1-23-F12
(gb|BM792645.1|), blast E-value=0, identity=92.31% |
|
86-316, est_t_truncatus529 HML_TuTr_IL-2 Tursiops truncatus cDNA, mRNA
(gb|DV468118.1|), blast E-value=0, identity=93.94% |
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43-316, sh2P0030N06_F.ab1 adult sheep fracture callus 7d Ovis aries cDNA,
(gb|DY498898.1|), blast E-value=0, identity=86.86% |
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4-333, gnl|bosTau2|chr17 (27454162-27453835) |
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4-333, gnl|canFam2|chr26 (9537888-9537510) |
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4-333, gnl|echTel1|scaffold_317027 (165784-166144) |
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4-333, gnl|galGal2|chr15 (5158007-5157593) |
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4-333, gnl|hg17|chr12 (121993706-121994080) |
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4-333, gnl|Hg17|chr12 (121994185-121993861) |
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4-333, gnl|loxAfr1|scaffold_106418 (4779-5153) |
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4-333, gnl|mm7|chr5 (123365330-123365700) |
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4-333, gnl|Mm7|chr5 (123365801-123365486) |
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4-333, gnl|monDom2|scaffold_97 (3411892-3412242) |
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4-333, gnl|oryCun1|scaffold_195345 (18250-18580) |
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4-333, gnl|panTro1|chr10 (125073869-125074246) |
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4-333, gnl|rheMac2|chr11 (124252473-124252850) |
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4-333, gnl|rn3|chr12 (33465838-33465486) |
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4-333, gnl|xenTro1|scaffold_100 (1852849-1853230) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
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4-333, gnl|bosTau2|chr17 (27454162-27453835) |
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4-333, gnl|canFam2|chr26 (9537888-9537510) |
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4-333, gnl|echTel1|scaffold_317027 (165784-166144) |
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4-333, gnl|galGal2|chr15 (5158007-5157593) |
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4-333, gnl|hg17|chr12 (121993706-121994080) |
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4-333, gnl|Hg17|chr12 (121994185-121993861) |
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4-333, gnl|loxAfr1|scaffold_106418 (4779-5153) |
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4-333, gnl|mm7|chr5 (123365330-123365700) |
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4-333, gnl|Mm7|chr5 (123365801-123365486) |
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4-333, gnl|monDom2|scaffold_97 (3411892-3412242) |
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4-333, gnl|oryCun1|scaffold_195345 (18250-18580) |
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4-333, gnl|panTro1|chr10 (125073869-125074246) |
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4-333, gnl|rheMac2|chr11 (124252473-124252850) |
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4-333, gnl|rn3|chr12 (33465838-33465486) |
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4-333, gnl|xenTro1|scaffold_100 (1852849-1853230) |
