Non-Coding RNA Search

Pig1-66I09

Sequence:


               
               GACAGGAAATCGAACAGCGATTACAGCAGCAGGCAGCCCTCTCCCCCACTACGGCTCCAG
CTGTGTCCAGTGTCAGTAAACAAGAGACCATAATGAGACATCATACACTTCGGCAGGCTC
CACAGCCCCAAAGCAGCCTCCAGCGTGGCATACCCACATCTGCCCGTTCCATGCTTTCCA
ACTTCGCACAGGCACCCCAGCTGTCTGTGCCAGGTGGCCTCCTTGGTATGCCAGGTGTCA
ACATTGCATACTTGAACACTGGCATCGGAGGACACAAAGCCCCCAGTTTGGCAGACCGAC
AGCGGGAATACCTTTTAGACATGATCCCTCCCCGGTCTATATCGCAGTCCATCAGTGGAC
AGAAATAACGCCTGTTCCACTTGTGCTGCCCCAACCTTGAATCCTTTACCCCTCTCCTCT
CCCATTGCCCCCAACTTCCGTCGCATGCAGTGCCTGTACTGGTGCCTACCATACACGGAA
AACAAAACAGAAAAACAGAAGACAAAAAGTAGAAATCAACAAGAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACAGGAAATCGAACAGCGATTACAGCAGCAGGCAGCCCTCTCCCCCACTACGGCTCCAG
CTGTGTCCAGTGTCAGTAAACAAGAGACCATAATGAGACATCATACACTTCGGCAGGCTC
CACAGCCCCAAAGCAGCCTCCAGCGTGGCATACCCACATCTGCCCGTTCCATGCTTTCCA
ACTTCGCACAGGCACCCCAGCTGTCTGTGCCAGGTGGCCTCCTTGGTATGCCAGGTGTCA
ACATTGCATACTTGAACACTGGCATCGGAGGACACAAAGCCCCCAGTTTGGCAGACCGAC
AGCGGGAATACCTTTTAGACATGATCCCTCCCCGGTCTATATCGCAGTCCATCAGTGGAC
AGAAATAACGCCTGTTCCACTTGTGCTGCCCCAACCTTGAATCCTTTACCCCTCTCCTCT
CCCATTGCCCCCAACTTCCGTCGCATGCAGTGCCTGTACTGGTGCCTACCATACACGGAA
AACAAAACAGAAAAACAGAAGACAAAAAGTAGAAATCAACAAGAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|37994718|gb|AAH60294.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|37994718|gb|AAH60294.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               312-527, - strand, RNAz p=0.988327

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               312-527, - strand, RNAz p=0.988327

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               2-117, gnl|bosTau2|chr3 (8033628-8033513)
               

               
               2-117, gnl|Hg17|chr1 (150597685-150597570)
               

               
               2-117, gnl|Mm7|chr3 (90486406-90486521)
               


               
               233-527, gnl|bosTau2|chr3 (8032586-8032295)
               

               
               233-527, gnl|Hg17|chr1 (150595861-150595568)
               

               
               233-527, gnl|Mm7|chr3 (90488602-90488894)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-117, gnl|bosTau2|chr3 (8033628-8033513)
               

               
               2-117, gnl|Hg17|chr1 (150597685-150597570)
               

               
               2-117, gnl|Mm7|chr3 (90486406-90486521)
               


               
               233-527, gnl|bosTau2|chr3 (8032586-8032295)
               

               
               233-527, gnl|Hg17|chr1 (150595861-150595568)
               

               
               233-527, gnl|Mm7|chr3 (90488602-90488894)

	2-117, gnl\|bosTau2\|chr3 (8033628-8033513)
	2-117, gnl\|Hg17\|chr1 (150597685-150597570)
	2-117, gnl\|Mm7\|chr3 (90486406-90486521)

	233-527, gnl\|bosTau2\|chr3 (8032586-8032295)
	233-527, gnl\|Hg17\|chr1 (150595861-150595568)
	233-527, gnl\|Mm7\|chr3 (90488602-90488894)