Non-Coding RNA Search

Pig1-66P17

Sequence:


               
               GCGGACGCGTGGGAAGAATGCTTGGTTTGCCATAGATCTGGGTCTCTGGGTGATACCATC
AGCATATACACTTCGTCATGCTCGTGGTTATGGAAGGTCTGCACTGAGAAATTGGGTTTT
CCAGGTATCCAAAGATGGACAGAACTGGACTTCTTTATATACCCATGGTGATGACTGCAG
TCTCAATGAACCAGGGTCAACAGCCACCTGGCCTCTTGATCCACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGACGCGTGGGAAGAATGCTTGGTTTGCCATAGATCTGGGTCTCTGGGTGATACCATC
AGCATATACACTTCGTCATGCTCGTGGTTATGGAAGGTCTGCACTGAGAAATTGGGTTTT
CCAGGTATCCAAAGATGGACAGAACTGGACTTCTTTATATACCCATGGTGATGACTGCAG
TCTCAATGAACCAGGGTCAACAGCCACCTGGCCTCTTGATCCACC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               79-197, - strand, RNAz p=0.640503

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               79-197, - strand, RNAz p=0.640503

Aligned organism(s): 18 entry(ies)

More info

Aligned organism(s): 18 entry(ies)

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               14-197, gnl|bosTau2|chr1 (59536446-59536263)
               

               
               14-197, gnl|canFam2|chr8 (13434524-13434695)
               

               
               14-197, gnl|danRer3|chrNA (42910019-42910190)
               

               
               14-197, gnl|echTel1|scaffold_316858 (8945-9118)
               

               
               14-197, gnl|fr1|chrUn (223711638-223711916)
               

               
               14-197, gnl|galGal2|chr5 (31236381-31236552)
               

               
               14-197, gnl|hg17|chr14 (30673828-30673999)
               

               
               14-197, gnl|Hg17|chr14 (30674010-30673827)
               

               
               14-197, gnl|loxAfr1|scaffold_9007 (66868-66697)
               

               
               14-197, gnl|mm7|chr12 (49786679-49786850)
               

               
               14-197, gnl|Mm7|chr12 (49786861-49786678)
               

               
               14-197, gnl|monDom2|scaffold_53 (3745212-3745383)
               

               
               14-197, gnl|oryCun1|scaffold_164439 (6254-6425)
               

               
               14-197, gnl|panTro1|chr15 (29820254-29820425)
               

               
               14-197, gnl|rheMac2|chr7 (94091279-94091450)
               

               
               14-197, gnl|rn3|chr6 (71875821-71875992)
               

               
               14-197, gnl|tetNig1|chrUn_random (83166787-83166521)
               

               
               14-197, gnl|xenTro1|scaffold_271 (1157621-1157450)

Aligned organism(s): 18 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               14-197, gnl|bosTau2|chr1 (59536446-59536263)
               

               
               14-197, gnl|canFam2|chr8 (13434524-13434695)
               

               
               14-197, gnl|danRer3|chrNA (42910019-42910190)
               

               
               14-197, gnl|echTel1|scaffold_316858 (8945-9118)
               

               
               14-197, gnl|fr1|chrUn (223711638-223711916)
               

               
               14-197, gnl|galGal2|chr5 (31236381-31236552)
               

               
               14-197, gnl|hg17|chr14 (30673828-30673999)
               

               
               14-197, gnl|Hg17|chr14 (30674010-30673827)
               

               
               14-197, gnl|loxAfr1|scaffold_9007 (66868-66697)
               

               
               14-197, gnl|mm7|chr12 (49786679-49786850)
               

               
               14-197, gnl|Mm7|chr12 (49786861-49786678)
               

               
               14-197, gnl|monDom2|scaffold_53 (3745212-3745383)
               

               
               14-197, gnl|oryCun1|scaffold_164439 (6254-6425)
               

               
               14-197, gnl|panTro1|chr15 (29820254-29820425)
               

               
               14-197, gnl|rheMac2|chr7 (94091279-94091450)
               

               
               14-197, gnl|rn3|chr6 (71875821-71875992)
               

               
               14-197, gnl|tetNig1|chrUn_random (83166787-83166521)
               

               
               14-197, gnl|xenTro1|scaffold_271 (1157621-1157450)

	14-197, gnl\|bosTau2\|chr1 (59536446-59536263)
	14-197, gnl\|canFam2\|chr8 (13434524-13434695)
	14-197, gnl\|danRer3\|chrNA (42910019-42910190)
	14-197, gnl\|echTel1\|scaffold_316858 (8945-9118)
	14-197, gnl\|fr1\|chrUn (223711638-223711916)
	14-197, gnl\|galGal2\|chr5 (31236381-31236552)
	14-197, gnl\|hg17\|chr14 (30673828-30673999)
	14-197, gnl\|Hg17\|chr14 (30674010-30673827)
	14-197, gnl\|loxAfr1\|scaffold_9007 (66868-66697)
	14-197, gnl\|mm7\|chr12 (49786679-49786850)
	14-197, gnl\|Mm7\|chr12 (49786861-49786678)
	14-197, gnl\|monDom2\|scaffold_53 (3745212-3745383)
	14-197, gnl\|oryCun1\|scaffold_164439 (6254-6425)
	14-197, gnl\|panTro1\|chr15 (29820254-29820425)
	14-197, gnl\|rheMac2\|chr7 (94091279-94091450)
	14-197, gnl\|rn3\|chr6 (71875821-71875992)
	14-197, gnl\|tetNig1\|chrUn_random (83166787-83166521)
	14-197, gnl\|xenTro1\|scaffold_271 (1157621-1157450)