Non-Coding RNA Search

Pig1-67G24

Sequence:


               
               GAATGCCTCGTTTTGTTGCCTTCAAAAGCCAACAAATTGGAGTTAACTTGACAGGAAGTG
GCTTAATAATTAGATTATTTATTTATTCCTGACACATATCCCCCTGTTACTAGTCTCAGG
AGACCCTGTAGATGGTACGATTTTCAAGCTGCCATTACTTCGCTGTCTTCTGTGAACAAA
GAAGCTACTGTCTATCAGTCAATTAAATGCACTCTTTAAGCGGAGGCTGCAAAGTCCTCA
ATGGAGAGAGCTCTGGGACACTGTGGCTGATGATTCCTTTCTCTGTACTGTACATCACAC
TCTCAACTATGGTCCCCGCAGAGATGGAATAAAGTCATGCATTAAAATATCACTTGTTGA
TTTGTTTGCTAATGAAGAGCCATTGAAATGTTTGTGTATTTCTATGGCAAAATTGTTGAT
AAAAGGGCCTACTTGCCTGCCTATCTGAGTTTATCTGCCATGAGTGCTTATTTAAGAATT
ATTAAAACTGCATTCAACGAACAACAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAATGCCTCGTTTTGTTGCCTTCAAAAGCCAACAAATTGGAGTTAACTTGACAGGAAGTG
GCTTAATAATTAGATTATTTATTTATTCCTGACACATATCCCCCTGTTACTAGTCTCAGG
AGACCCTGTAGATGGTACGATTTTCAAGCTGCCATTACTTCGCTGTCTTCTGTGAACAAA
GAAGCTACTGTCTATCAGTCAATTAAATGCACTCTTTAAGCGGAGGCTGCAAAGTCCTCA
ATGGAGAGAGCTCTGGGACACTGTGGCTGATGATTCCTTTCTCTGTACTGTACATCACAC
TCTCAACTATGGTCCCCGCAGAGATGGAATAAAGTCATGCATTAAAATATCACTTGTTGA
TTTGTTTGCTAATGAAGAGCCATTGAAATGTTTGTGTATTTCTATGGCAAAATTGTTGAT
AAAAGGGCCTACTTGCCTGCCTATCTGAGTTTATCTGCCATGAGTGCTTATTTAAGAATT
ATTAAAACTGCATTCAACGAACAACAG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               362-479, - strand, RNAz p=0.626928

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               362-479, - strand, RNAz p=0.626928

Aligned organism(s): 15 entry(ies)

More info

Aligned organism(s): 15 entry(ies)

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               2-507, gnl|bosTau2|chr24 (22556866-22556361)
               

               
               2-507, gnl|canFam2|chr7 (66337297-66336518)
               

               
               2-507, gnl|dasNov1|scaffold_80 (141893-142651)
               

               
               2-507, gnl|echTel1|scaffold_316775 (196127-195347)
               

               
               2-507, gnl|galGal2|chr2 (102912978-102913748)
               

               
               2-507, gnl|hg17|chr18 (21021213-21021995)
               

               
               2-507, gnl|Hg17|chr18 (21021909-21021403)
               

               
               2-507, gnl|loxAfr1|scaffold_170 (42371-43146)
               

               
               2-507, gnl|mm7|chr18 (14158710-14159544)
               

               
               2-507, gnl|Mm7|chr18 (14159458-14158952)
               

               
               2-507, gnl|monDom2|scaffold_21 (40989373-40990147)
               

               
               2-507, gnl|oryCun1|scaffold_174770 (90014-90790)
               

               
               2-507, gnl|panTro1|chr17 (16948825-16949606)
               

               
               2-507, gnl|rheMac2|chr18 (18200739-18201520)
               

               
               2-507, gnl|rn3|chr18 (4977527-4978348)

Aligned organism(s): 15 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-507, gnl|bosTau2|chr24 (22556866-22556361)
               

               
               2-507, gnl|canFam2|chr7 (66337297-66336518)
               

               
               2-507, gnl|dasNov1|scaffold_80 (141893-142651)
               

               
               2-507, gnl|echTel1|scaffold_316775 (196127-195347)
               

               
               2-507, gnl|galGal2|chr2 (102912978-102913748)
               

               
               2-507, gnl|hg17|chr18 (21021213-21021995)
               

               
               2-507, gnl|Hg17|chr18 (21021909-21021403)
               

               
               2-507, gnl|loxAfr1|scaffold_170 (42371-43146)
               

               
               2-507, gnl|mm7|chr18 (14158710-14159544)
               

               
               2-507, gnl|Mm7|chr18 (14159458-14158952)
               

               
               2-507, gnl|monDom2|scaffold_21 (40989373-40990147)
               

               
               2-507, gnl|oryCun1|scaffold_174770 (90014-90790)
               

               
               2-507, gnl|panTro1|chr17 (16948825-16949606)
               

               
               2-507, gnl|rheMac2|chr18 (18200739-18201520)
               

               
               2-507, gnl|rn3|chr18 (4977527-4978348)

	2-507, gnl\|bosTau2\|chr24 (22556866-22556361)
	2-507, gnl\|canFam2\|chr7 (66337297-66336518)
	2-507, gnl\|dasNov1\|scaffold_80 (141893-142651)
	2-507, gnl\|echTel1\|scaffold_316775 (196127-195347)
	2-507, gnl\|galGal2\|chr2 (102912978-102913748)
	2-507, gnl\|hg17\|chr18 (21021213-21021995)
	2-507, gnl\|Hg17\|chr18 (21021909-21021403)
	2-507, gnl\|loxAfr1\|scaffold_170 (42371-43146)
	2-507, gnl\|mm7\|chr18 (14158710-14159544)
	2-507, gnl\|Mm7\|chr18 (14159458-14158952)
	2-507, gnl\|monDom2\|scaffold_21 (40989373-40990147)
	2-507, gnl\|oryCun1\|scaffold_174770 (90014-90790)
	2-507, gnl\|panTro1\|chr17 (16948825-16949606)
	2-507, gnl\|rheMac2\|chr18 (18200739-18201520)
	2-507, gnl\|rn3\|chr18 (4977527-4978348)