Non-Coding RNA Search

Pig1-68J13

Sequence:


               
               CCCACGCGTCCGCTGGGATCCCTCCCTTCTGTTCATTTACTTATTCAACAGATGCTTGCT
GTGGTTTGCTATATGTGATAACTAAAATAGGCCCTAACCGCGTGGAGCTCCCAGTCCATC
AGGGAGAGAGACAGACCCATCACCAGACACTGGCAGTCAAGAGTGGTCTGGACTGGGCTG
AGAAAACCCCAGGGGACTGGAGGCAGCCAGAAGAGGTGCCTGACTCCACCTGGGGGTATC
AGAAGGGGCCTCCTGAAGGGAGGGATGCCTGAGCTGAGACCTGAAGGATGAGGAAAGGGC
AACCTAAGAGGAGAGTGGGAGGGGCANGCCANGCANAGGGAACAGAGTGTGAGGGGGGGT
CANAGTGAGTCATGAGGCTCACATGTTGGGAGAAGCCGGAAGCAGGACCTCTGTATGCAT
CTGCTCACATCATCCTCTCTGTCCTCAGTGTTCCCCCCAAAAACTCCTCAGACATCCAAG
CATCCCTGGTGCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCACGCGTCCGCTGGGATCCCTCCCTTCTGTTCATTTACTTATTCAACAGATGCTTGCT
GTGGTTTGCTATATGTGATAACTAAAATAGGCCCTAACCGCGTGGAGCTCCCAGTCCATC
AGGGAGAGAGACAGACCCATCACCAGACACTGGCAGTCAAGAGTGGTCTGGACTGGGCTG
AGAAAACCCCAGGGGACTGGAGGCAGCCAGAAGAGGTGCCTGACTCCACCTGGGGGTATC
AGAAGGGGCCTCCTGAAGGGAGGGATGCCTGAGCTGAGACCTGAAGGATGAGGAAAGGGC
AACCTAAGAGGAGAGTGGGAGGGGCANGCCANGCANAGGGAACAGAGTGTGAGGGGGGGT
CANAGTGAGTCATGAGGCTCACATGTTGGGAGAAGCCGGAAGCAGGACCTCTGTATGCAT
CTGCTCACATCATCCTCTCTGTCCTCAGTGTTCCCCCCAAAAACTCCTCAGACATCCAAG
CATCCCTGGTGCAC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               87-324, + strand, RNAz p=0.976217

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               87-324, + strand, RNAz p=0.976217

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               13-491, gnl|bosTau2|chr18 (41894087-41894559)
               

               
               13-491, gnl|Hg17|chr19 (41298942-41299379)
               

               
               13-491, gnl|Mm7|chr7 (27172945-27172533)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               13-491, gnl|bosTau2|chr18 (41894087-41894559)
               

               
               13-491, gnl|Hg17|chr19 (41298942-41299379)
               

               
               13-491, gnl|Mm7|chr7 (27172945-27172533)

	13-491, gnl\|bosTau2\|chr18 (41894087-41894559)
	13-491, gnl\|Hg17\|chr19 (41298942-41299379)
	13-491, gnl\|Mm7\|chr7 (27172945-27172533)