Non-Coding RNA Search

Pig1-68N13

Sequence:


               
               GTTCCATTCTCAAGTTTTTAAAACCAAGGGGAACTTGTATATGGGGCCTGTTTTTCAGCC
TGTTTGCTACCTTTTTTGCATTCTGTCCCATGTGAATTTTACAGACACTGGGCTAAAAAG
GGTATTCGGACACTCACTTGGACACACATTCCTAGAATGTCATCATGTGGTCCTTATTCC
ACGTCACCAAACAAGACCCTGTTTACAACTTTTTCTTTTTTTTTTTTAATTTCAAATCTT
TCTGAGGAGATTATTATATATGACATATCTATAGCTATGTGTATGGCCATAAATGTATTT
CTGGGTGTACATATGTATAGTCATGTATTCTTACATATGTCCAGACAAATACAGAGATAT
ATAAAGTACATAGAACTTCCTTACTTGTAAATAGCCAAAAGGTACTGACATGAATGATGG
ATTTTCACATTTAAATAGTCATCAACATGAAGCCATGATTAATGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTCCATTCTCAAGTTTTTAAAACCAAGGGGAACTTGTATATGGGGCCTGTTTTTCAGCC
TGTTTGCTACCTTTTTTGCATTCTGTCCCATGTGAATTTTACAGACACTGGGCTAAAAAG
GGTATTCGGACACTCACTTGGACACACATTCCTAGAATGTCATCATGTGGTCCTTATTCC
ACGTCACCAAACAAGACCCTGTTTACAACTTTTTCTTTTTTTTTTTTAATTTCAAATCTT
TCTGAGGAGATTATTATATATGACATATCTATAGCTATGTGTATGGCCATAAATGTATTT
CTGGGTGTACATATGTATAGTCATGTATTCTTACATATGTCCAGACAAATACAGAGATAT
ATAAAGTACATAGAACTTCCTTACTTGTAAATAGCCAAAAGGTACTGACATGAATGATGG
ATTTTCACATTTAAATAGTCATCAACATGAAGCCATGATTAATGC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               117-410, - strand, RNAz p=0.99418

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               117-410, - strand, RNAz p=0.99418

Predicted microRNA(s): 1 entry(ies)

More info

Predicted microRNA(s): 1 entry(ies)

Help | Less info


               
               291-385, + strand, RNAmicro p=0.999968

Predicted microRNA(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               291-385, + strand, RNAmicro p=0.999968

Similar Transcript(s): 6 entry(ies)

More info

Similar Transcript(s): 6 entry(ies)

Help | Less info


               
               228-410, AJ688529 KN261 Bos taurus cDNA clone KN261-048_K03, mRNA sequence 
(emb|AJ688529.1|), blast E-value=0, identity=96.17% 
               

               
               238-190, BX108859 Soares adult brain N2b5HB55Y Homo sapiens cDNA clone 
(emb|BX108859.1|), blast E-value=0.000000000005, identity=94.23% 
               

               
               228-402, DG2-67i15 DG2-brain Canis familiaris cDNA 3', mRNA sequence 
(gb|CO592963.1|), blast E-value=0, identity=96% 
               

               
               228-410, UMC-bcl_0A01-016-a10 Day 14 CL from a pregnant animal bcl Bos 
(gb|CV974469.1|), blast E-value=0, identity=96.17% 
               

               
               228-410, 1372494 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN536398.1|), 
blast E-value=0, identity=96.17% 
               

               
               228-410, 1374030 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN537786.1|), 
blast E-value=0, identity=95.63%

Similar Transcript(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               228-410, AJ688529 KN261 Bos taurus cDNA clone KN261-048_K03, mRNA sequence 
(emb|AJ688529.1|), blast E-value=0, identity=96.17% 
               

               
               238-190, BX108859 Soares adult brain N2b5HB55Y Homo sapiens cDNA clone 
(emb|BX108859.1|), blast E-value=0.000000000005, identity=94.23% 
               

               
               228-402, DG2-67i15 DG2-brain Canis familiaris cDNA 3', mRNA sequence 
(gb|CO592963.1|), blast E-value=0, identity=96% 
               

               
               228-410, UMC-bcl_0A01-016-a10 Day 14 CL from a pregnant animal bcl Bos 
(gb|CV974469.1|), blast E-value=0, identity=96.17% 
               

               
               228-410, 1372494 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN536398.1|), 
blast E-value=0, identity=96.17% 
               

               
               228-410, 1374030 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN537786.1|), 
blast E-value=0, identity=95.63%

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-465, gnl|bosTau2|chr5 (41938553-41938091)
               

               
               1-465, gnl|Hg17|chr12 (100024360-100024826)
               

               
               1-465, gnl|Mm7|chr10 (88508295-88507823)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-465, gnl|bosTau2|chr5 (41938553-41938091)
               

               
               1-465, gnl|Hg17|chr12 (100024360-100024826)
               

               
               1-465, gnl|Mm7|chr10 (88508295-88507823)

	228-410, AJ688529 KN261 Bos taurus cDNA clone KN261-048_K03, mRNA sequence (emb\|AJ688529.1\|), blast E-value=0, identity=96.17%
	238-190, BX108859 Soares adult brain N2b5HB55Y Homo sapiens cDNA clone (emb\|BX108859.1\|), blast E-value=0.000000000005, identity=94.23%
	228-402, DG2-67i15 DG2-brain Canis familiaris cDNA 3', mRNA sequence (gb\|CO592963.1\|), blast E-value=0, identity=96%
	228-410, UMC-bcl_0A01-016-a10 Day 14 CL from a pregnant animal bcl Bos (gb\|CV974469.1\|), blast E-value=0, identity=96.17%
	228-410, 1372494 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb\|DN536398.1\|), blast E-value=0, identity=96.17%
	228-410, 1374030 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb\|DN537786.1\|), blast E-value=0, identity=95.63%

	1-465, gnl\|bosTau2\|chr5 (41938553-41938091)
	1-465, gnl\|Hg17\|chr12 (100024360-100024826)
	1-465, gnl\|Mm7\|chr10 (88508295-88507823)