Non-Coding RNA Search

Pig1-6I04

Sequence:


               
               TTTCAATTCAGGTAGAAGTACACTTTGCCACCTGAAGAGATACATGTGAAGGGAGCTTGG
GGAGGGGTGGGAAGTTGGGAAAAAAGAGGCTGAAGAATGAGGGTCGTAGCTTTAGCAACA
TTGAGGGACTACATTTCCCAAGCAGATCTGTAGCATTTGCTGTTGACCTCTTTTGAGATG
AATTCTCCCATAGGACCTGCCAGACAGCACTGAGACTTGGAGGAAATCAGACAGAAAATG
GCTCACCCTGATAAAGAAGGGGAGTAACTATATTTTAAATTAAACTTGCTTTTTCCAACA
CTGTGAGGTTTCTGTAATATTTAGCTTTTATTTGGAAGCGATAGCGTATGGCATTTTTTA
TGCTATTTGGTTTGTATTGTCTACTGCAGGCTTCTTTGTACAAGCTTGGCCTGGGCTTAC
CCTCGTCTGGACACTGTTTTAAAGTGTCGCAGCTGCCCATGCTGCCAGAGGCTCTGATGT
GAAGCTGTATTCTCTAGATCTATGTTTTTAAGTCCGCATGATTGGTGACAGCTATTTGTG
GCAATAGAAAAGCCCACTGACTCAAAACAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTCAATTCAGGTAGAAGTACACTTTGCCACCTGAAGAGATACATGTGAAGGGAGCTTGG
GGAGGGGTGGGAAGTTGGGAAAAAAGAGGCTGAAGAATGAGGGTCGTAGCTTTAGCAACA
TTGAGGGACTACATTTCCCAAGCAGATCTGTAGCATTTGCTGTTGACCTCTTTTGAGATG
AATTCTCCCATAGGACCTGCCAGACAGCACTGAGACTTGGAGGAAATCAGACAGAAAATG
GCTCACCCTGATAAAGAAGGGGAGTAACTATATTTTAAATTAAACTTGCTTTTTCCAACA
CTGTGAGGTTTCTGTAATATTTAGCTTTTATTTGGAAGCGATAGCGTATGGCATTTTTTA
TGCTATTTGGTTTGTATTGTCTACTGCAGGCTTCTTTGTACAAGCTTGGCCTGGGCTTAC
CCTCGTCTGGACACTGTTTTAAAGTGTCGCAGCTGCCCATGCTGCCAGAGGCTCTGATGT
GAAGCTGTATTCTCTAGATCTATGTTTTTAAGTCCGCATGATTGGTGACAGCTATTTGTG
GCAATAGAAAAGCCCACTGACTCAAAACAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               41-156, - strand, RNAz p=0.985895
               

               
               316-475, - strand, RNAz p=0.845343

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               41-156, - strand, RNAz p=0.985895
               

               
               316-475, - strand, RNAz p=0.845343

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-570, gnl|bosTau2|chr23 (15327444-15326875)
               

               
               2-570, gnl|Hg17|chr6 (41870828-41870260)
               

               
               2-570, gnl|Mm7|chr17 (45818634-45819190)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-570, gnl|bosTau2|chr23 (15327444-15326875)
               

               
               2-570, gnl|Hg17|chr6 (41870828-41870260)
               

               
               2-570, gnl|Mm7|chr17 (45818634-45819190)

	41-156, - strand, RNAz p=0.985895
	316-475, - strand, RNAz p=0.845343

	2-570, gnl\|bosTau2\|chr23 (15327444-15326875)
	2-570, gnl\|Hg17\|chr6 (41870828-41870260)
	2-570, gnl\|Mm7\|chr17 (45818634-45819190)