Non-Coding RNA Search

Pig1-6K09

Sequence:


               
               ATTTTCCTCCAGTTACCTTTTTTTGCCTGTATTTCTCTCATGCTATTTGGGTCTTGAAAA
TGCTCTGATGTATTTTTTTCATTCTATTTTTTTGTCTGAATTCTGAGATTGTGAGGATGT
CTTCTGATTCATCAGTTAACCTCTTGGACTCCAGGTAATCTGGAGTTTGTCTCATCTGTT
GGAATTTTTATATCTTTGTTTTCCGGTTTCCAAATTGGTTCTTTTTTATGGATTCTTGTT
TTTATGCCTGCTTTTGTGTCCCAATTTCCTGTTTTTTTGGTTATTATGCCTCATGACCTC
TGAAAGGTTTCAACAAAACTTATTTTTAAAGTCATTTTCACATTGCTCTATTATTTCCAA
TTTGCATAGAATGACTTTATCTCCTGATTGTTTAGTAGTTTTTTTAAAAAACTATTTCTG
TCTTTTCATAATTTTGCTTTGCAGACTCATCTTGAATGGAATTGGAACTTTCCAAACGAC
CTCTGTGTAGTACTGATTTTGTTTTTGCTTCCACCCATGACCCTTTGCAGTGCTTCAGTC
CACAGCAGAACTTACATATATAGTTCAGAATGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTTCCTCCAGTTACCTTTTTTTGCCTGTATTTCTCTCATGCTATTTGGGTCTTGAAAA
TGCTCTGATGTATTTTTTTCATTCTATTTTTTTGTCTGAATTCTGAGATTGTGAGGATGT
CTTCTGATTCATCAGTTAACCTCTTGGACTCCAGGTAATCTGGAGTTTGTCTCATCTGTT
GGAATTTTTATATCTTTGTTTTCCGGTTTCCAAATTGGTTCTTTTTTATGGATTCTTGTT
TTTATGCCTGCTTTTGTGTCCCAATTTCCTGTTTTTTTGGTTATTATGCCTCATGACCTC
TGAAAGGTTTCAACAAAACTTATTTTTAAAGTCATTTTCACATTGCTCTATTATTTCCAA
TTTGCATAGAATGACTTTATCTCCTGATTGTTTAGTAGTTTTTTTAAAAAACTATTTCTG
TCTTTTCATAATTTTGCTTTGCAGACTCATCTTGAATGGAATTGGAACTTTCCAAACGAC
CTCTGTGTAGTACTGATTTTGTTTTTGCTTCCACCCATGACCCTTTGCAGTGCTTCAGTC
CACAGCAGAACTTACATATATAGTTCAGAATGC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               74-227, - strand, RNAz p=0.995411

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               74-227, - strand, RNAz p=0.995411

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

Help | Less info


               
               1-227, gnl|bosTau2|chr6 (9726692-9726926)
               

               
               1-227, gnl|dasNov1|scaffold_6604 (7936-8210)
               

               
               1-227, gnl|echTel1|scaffold_291176 (90367-90657)
               

               
               1-227, gnl|hg17|chr4 (100838618-100838930)
               

               
               1-227, gnl|Hg17|chr4 (100838889-100838661)
               

               
               1-227, gnl|mm7|chr3 (137954232-137953925)
               

               
               1-227, gnl|oryCun1|scaffold_179793 (1875-1577)
               

               
               1-227, gnl|panTro1|chr3 (117215081-117215390)
               

               
               1-227, gnl|rheMac2|chr5 (92530737-92531045)
               

               
               1-227, gnl|rn3|chr2 (235659047-235658776)
               


               
               415-571, gnl|bosTau2|chr6 (9727040-9727203)

Aligned organism(s): 11 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-227, gnl|bosTau2|chr6 (9726692-9726926)
               

               
               1-227, gnl|dasNov1|scaffold_6604 (7936-8210)
               

               
               1-227, gnl|echTel1|scaffold_291176 (90367-90657)
               

               
               1-227, gnl|hg17|chr4 (100838618-100838930)
               

               
               1-227, gnl|Hg17|chr4 (100838889-100838661)
               

               
               1-227, gnl|mm7|chr3 (137954232-137953925)
               

               
               1-227, gnl|oryCun1|scaffold_179793 (1875-1577)
               

               
               1-227, gnl|panTro1|chr3 (117215081-117215390)
               

               
               1-227, gnl|rheMac2|chr5 (92530737-92531045)
               

               
               1-227, gnl|rn3|chr2 (235659047-235658776)
               


               
               415-571, gnl|bosTau2|chr6 (9727040-9727203)

	1-227, gnl\|bosTau2\|chr6 (9726692-9726926)
	1-227, gnl\|dasNov1\|scaffold_6604 (7936-8210)
	1-227, gnl\|echTel1\|scaffold_291176 (90367-90657)
	1-227, gnl\|hg17\|chr4 (100838618-100838930)
	1-227, gnl\|Hg17\|chr4 (100838889-100838661)
	1-227, gnl\|mm7\|chr3 (137954232-137953925)
	1-227, gnl\|oryCun1\|scaffold_179793 (1875-1577)
	1-227, gnl\|panTro1\|chr3 (117215081-117215390)
	1-227, gnl\|rheMac2\|chr5 (92530737-92531045)
	1-227, gnl\|rn3\|chr2 (235659047-235658776)

	415-571, gnl\|bosTau2\|chr6 (9727040-9727203)