Non-Coding RNA Search

Pig1-71B10

Sequence:


               
               CAGTGATATGTTGTCTGAAAAGCCTACCACCATTTCTAGGGGGAGGGCACAGAGGAGGCG
TTACTAAGAAGCTTCCTGATGATGATTTATCATCACACTGTGTAGGAGTCACACTGACTT
GGGAATTCCAAAATCCCCTTTGCCCACCGTTATCCACAGCTCTGTCACTGCACTTGGGCA
GCCACAATATCTCCACCTCAGGGGGAAGAAAGGAAACCTCTAAAAACCCAAGAAATAACT
ATTCCTAAGAAGCAAAGAATCCTCATCCCATACTGCCTACGAATTTTTTACAGAGATATT
AGGATATTTATCCCAATTCTGAATTTCACATTAGCTGTTCAGGCTGTCCTGCTTATATTT
AAGCTGCATTTTATTGAGAAAAATGTGCTCTAAGTAAATGGAGTGACTTTACCAGCCCAT
TGAAAACATAGTCAAACTCAAGCCGTGACTCAGTAGCTAAAGTTAAAAAAATGCAGTTAT
ATAATATGCAAGATCAAATATGGCAAGAAAAGCAGTTTTTTTACCCAATCTTCTATTTTC
TAAGTAAGAAAAACTGTTTTCATTATTAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGTGATATGTTGTCTGAAAAGCCTACCACCATTTCTAGGGGGAGGGCACAGAGGAGGCG
TTACTAAGAAGCTTCCTGATGATGATTTATCATCACACTGTGTAGGAGTCACACTGACTT
GGGAATTCCAAAATCCCCTTTGCCCACCGTTATCCACAGCTCTGTCACTGCACTTGGGCA
GCCACAATATCTCCACCTCAGGGGGAAGAAAGGAAACCTCTAAAAACCCAAGAAATAACT
ATTCCTAAGAAGCAAAGAATCCTCATCCCATACTGCCTACGAATTTTTTACAGAGATATT
AGGATATTTATCCCAATTCTGAATTTCACATTAGCTGTTCAGGCTGTCCTGCTTATATTT
AAGCTGCATTTTATTGAGAAAAATGTGCTCTAAGTAAATGGAGTGACTTTACCAGCCCAT
TGAAAACATAGTCAAACTCAAGCCGTGACTCAGTAGCTAAAGTTAAAAAAATGCAGTTAT
ATAATATGCAAGATCAAATATGGCAAGAAAAGCAGTTTTTTTACCCAATCTTCTATTTTC
TAAGTAAGAAAAACTGTTTTCATTATTAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               44-138, + strand, RNAz p=0.998519

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               44-138, + strand, RNAz p=0.998519

Aligned organism(s): 19 entry(ies)

More info

Aligned organism(s): 19 entry(ies)

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               4-570, gnl|bosTau2|chr4 (33202656-33202089)
               

               
               4-570, gnl|canFam2|chr14 (49853009-49853461)
               

               
               4-570, gnl|canFam2|chr14 (49853030-49853794)
               

               
               4-570, gnl|dasNov1|scaffold_69730 (8220-7841)
               

               
               4-570, gnl|dasNov1|scaffold_69730 (8209-7473)
               

               
               4-570, gnl|hg17|chr12 (62360811-62361247)
               

               
               4-570, gnl|hg17|chr7 (35011246-35012047)
               

               
               4-570, gnl|Hg17|chr7 (35011883-35011294)
               

               
               4-570, gnl|mm7|chr9 (24605646-24606035)
               

               
               4-570, gnl|mm7|chr9 (24605652-24606347)
               

               
               4-570, gnl|Mm7|chr9 (24606223-24605691)
               

               
               4-570, gnl|oryCun1|scaffold_201853 (67900-67464)
               

               
               4-570, gnl|oryCun1|scaffold_201853 (67900-67084)
               

               
               4-570, gnl|panTro1|chr10_random (24228307-24227872)
               

               
               4-570, gnl|panTro1|chr10_random (24228296-24227495)
               

               
               4-570, gnl|rheMac2|chr3 (90963619-90963197)
               

               
               4-570, gnl|rheMac2|chr3 (90963608-90962820)
               

               
               4-570, gnl|rn3|chr8 (24349208-24349629)
               

               
               4-570, gnl|rn3|chr8 (24349214-24349943)

Aligned organism(s): 19 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-570, gnl|bosTau2|chr4 (33202656-33202089)
               

               
               4-570, gnl|canFam2|chr14 (49853009-49853461)
               

               
               4-570, gnl|canFam2|chr14 (49853030-49853794)
               

               
               4-570, gnl|dasNov1|scaffold_69730 (8220-7841)
               

               
               4-570, gnl|dasNov1|scaffold_69730 (8209-7473)
               

               
               4-570, gnl|hg17|chr12 (62360811-62361247)
               

               
               4-570, gnl|hg17|chr7 (35011246-35012047)
               

               
               4-570, gnl|Hg17|chr7 (35011883-35011294)
               

               
               4-570, gnl|mm7|chr9 (24605646-24606035)
               

               
               4-570, gnl|mm7|chr9 (24605652-24606347)
               

               
               4-570, gnl|Mm7|chr9 (24606223-24605691)
               

               
               4-570, gnl|oryCun1|scaffold_201853 (67900-67464)
               

               
               4-570, gnl|oryCun1|scaffold_201853 (67900-67084)
               

               
               4-570, gnl|panTro1|chr10_random (24228307-24227872)
               

               
               4-570, gnl|panTro1|chr10_random (24228296-24227495)
               

               
               4-570, gnl|rheMac2|chr3 (90963619-90963197)
               

               
               4-570, gnl|rheMac2|chr3 (90963608-90962820)
               

               
               4-570, gnl|rn3|chr8 (24349208-24349629)
               

               
               4-570, gnl|rn3|chr8 (24349214-24349943)

	4-570, gnl\|bosTau2\|chr4 (33202656-33202089)
	4-570, gnl\|canFam2\|chr14 (49853009-49853461)
	4-570, gnl\|canFam2\|chr14 (49853030-49853794)
	4-570, gnl\|dasNov1\|scaffold_69730 (8220-7841)
	4-570, gnl\|dasNov1\|scaffold_69730 (8209-7473)
	4-570, gnl\|hg17\|chr12 (62360811-62361247)
	4-570, gnl\|hg17\|chr7 (35011246-35012047)
	4-570, gnl\|Hg17\|chr7 (35011883-35011294)
	4-570, gnl\|mm7\|chr9 (24605646-24606035)
	4-570, gnl\|mm7\|chr9 (24605652-24606347)
	4-570, gnl\|Mm7\|chr9 (24606223-24605691)
	4-570, gnl\|oryCun1\|scaffold_201853 (67900-67464)
	4-570, gnl\|oryCun1\|scaffold_201853 (67900-67084)
	4-570, gnl\|panTro1\|chr10_random (24228307-24227872)
	4-570, gnl\|panTro1\|chr10_random (24228296-24227495)
	4-570, gnl\|rheMac2\|chr3 (90963619-90963197)
	4-570, gnl\|rheMac2\|chr3 (90963608-90962820)
	4-570, gnl\|rn3\|chr8 (24349208-24349629)
	4-570, gnl\|rn3\|chr8 (24349214-24349943)