Non-Coding RNA Search

Pig1-71M24

Sequence:


               
               TGATTGAGGCTCTTCCCTTCACATACCTAGGTTAGGGCTGTTCAAGCTCAAACTGCTCAT
AGCGGGGGAAACATTTCCTCTGTTGCTTAGTCCTATCTGGCAGTGGGAAGGCAGACATAC
CAAGGGAAGATGGGGGTTTGGGCCTGGATGAGGGTTAGCCATGTTGCAAGCGCCTGTTTG
TTACACCAGCAGGTACAGAAGAAGCTACTGTCTTGTGAAGTCAAATATTTGTTGGGGGGT
TGGAATTTGGGTGGTGGAGGAGGGGCTGTTCTGGGCATCAGTTGAGCAGATGCCCAGGAT
GCCTGGGGGAGACCAGCTTCCCCTACAAATCAGAGCTCTAAATTACAAGGTTTTTACCAA
CGCGAACAGTTGGGGGAAGTCGTCTGCTCTCATTTGCGTAATGGTTTCTGTCACTGGTGA
TTAGACACAGGATGAAGGAAAAGAAATTTGACAATTAGGAATGAGCAATCATTAATCTGA
ATCTGTTAGGAGACAGGGGAAGGATCCTTATCAATGGGCCAGCCCAACGTGAGGAGACCT
TCCTGCCCTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGATTGAGGCTCTTCCCTTCACATACCTAGGTTAGGGCTGTTCAAGCTCAAACTGCTCAT
AGCGGGGGAAACATTTCCTCTGTTGCTTAGTCCTATCTGGCAGTGGGAAGGCAGACATAC
CAAGGGAAGATGGGGGTTTGGGCCTGGATGAGGGTTAGCCATGTTGCAAGCGCCTGTTTG
TTACACCAGCAGGTACAGAAGAAGCTACTGTCTTGTGAAGTCAAATATTTGTTGGGGGGT
TGGAATTTGGGTGGTGGAGGAGGGGCTGTTCTGGGCATCAGTTGAGCAGATGCCCAGGAT
GCCTGGGGGAGACCAGCTTCCCCTACAAATCAGAGCTCTAAATTACAAGGTTTTTACCAA
CGCGAACAGTTGGGGGAAGTCGTCTGCTCTCATTTGCGTAATGGTTTCTGTCACTGGTGA
TTAGACACAGGATGAAGGAAAAGAAATTTGACAATTAGGAATGAGCAATCATTAATCTGA
ATCTGTTAGGAGACAGGGGAAGGATCCTTATCAATGGGCCAGCCCAACGTGAGGAGACCT
TCCTGCCCTTC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               184-383, - strand, RNAz p=0.977304
               

               
               431-543, + strand, RNAz p=0.661332

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               184-383, - strand, RNAz p=0.977304
               

               
               431-543, + strand, RNAz p=0.661332

Similar Transcript(s): 6 entry(ies)

More info

Similar Transcript(s): 6 entry(ies)

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               205-383, BB648077 RIKEN full-length enriched, 16 days embryo head Mus 
(dbj|BB648077.1|), blast E-value=0, identity=96.09% 
               

               
               205-383, 603353690F1 NIH_MGC_94 Mus musculus cDNA clone IMAGE (gb|BI731936.1|), 
blast E-value=0, identity=96.09% 
               

               
               205-383, AGENCOURT_10128598 NIH_MGC_134 Mus musculus cDNA clone 
(gb|BU509958.1|), blast E-value=0, identity=96.09% 
               

               
               205-383, 701613882H1 RACAUNT02 Rattus norvegicus cDNA clone 701613882 5', 
(gb|CK225289.1|), blast E-value=0, identity=96.65% 
               

               
               205-383, 704416318J1 RAERNOC02 Rattus norvegicus cDNA clone 704416318 3', 
(gb|CK225887.1|), blast E-value=0, identity=96.65% 
               

               
               205-383, BMSB16842 Hematopoietic stem cells Mus musculus cDNA, mRNA sequence 
(gb|DT924169.1|), blast E-value=0, identity=96.09%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               205-383, BB648077 RIKEN full-length enriched, 16 days embryo head Mus 
(dbj|BB648077.1|), blast E-value=0, identity=96.09% 
               

               
               205-383, 603353690F1 NIH_MGC_94 Mus musculus cDNA clone IMAGE (gb|BI731936.1|), 
blast E-value=0, identity=96.09% 
               

               
               205-383, AGENCOURT_10128598 NIH_MGC_134 Mus musculus cDNA clone 
(gb|BU509958.1|), blast E-value=0, identity=96.09% 
               

               
               205-383, 701613882H1 RACAUNT02 Rattus norvegicus cDNA clone 701613882 5', 
(gb|CK225289.1|), blast E-value=0, identity=96.65% 
               

               
               205-383, 704416318J1 RAERNOC02 Rattus norvegicus cDNA clone 704416318 3', 
(gb|CK225887.1|), blast E-value=0, identity=96.65% 
               

               
               205-383, BMSB16842 Hematopoietic stem cells Mus musculus cDNA, mRNA sequence 
(gb|DT924169.1|), blast E-value=0, identity=96.09%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-543, gnl|bosTau2|chr26 (12923499-12922947)
               

               
               2-543, gnl|Hg17|chr10 (102300618-102301177)
               

               
               2-543, gnl|Mm7|chr19 (44467530-44468078)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-543, gnl|bosTau2|chr26 (12923499-12922947)
               

               
               2-543, gnl|Hg17|chr10 (102300618-102301177)
               

               
               2-543, gnl|Mm7|chr19 (44467530-44468078)

	184-383, - strand, RNAz p=0.977304
	431-543, + strand, RNAz p=0.661332

	205-383, BB648077 RIKEN full-length enriched, 16 days embryo head Mus (dbj\|BB648077.1\|), blast E-value=0, identity=96.09%
	205-383, 603353690F1 NIH_MGC_94 Mus musculus cDNA clone IMAGE (gb\|BI731936.1\|), blast E-value=0, identity=96.09%
	205-383, AGENCOURT_10128598 NIH_MGC_134 Mus musculus cDNA clone (gb\|BU509958.1\|), blast E-value=0, identity=96.09%
	205-383, 701613882H1 RACAUNT02 Rattus norvegicus cDNA clone 701613882 5', (gb\|CK225289.1\|), blast E-value=0, identity=96.65%
	205-383, 704416318J1 RAERNOC02 Rattus norvegicus cDNA clone 704416318 3', (gb\|CK225887.1\|), blast E-value=0, identity=96.65%
	205-383, BMSB16842 Hematopoietic stem cells Mus musculus cDNA, mRNA sequence (gb\|DT924169.1\|), blast E-value=0, identity=96.09%

	2-543, gnl\|bosTau2\|chr26 (12923499-12922947)
	2-543, gnl\|Hg17\|chr10 (102300618-102301177)
	2-543, gnl\|Mm7\|chr19 (44467530-44468078)