Non-Coding RNA Search

Pig1-71N07

Sequence:


               
               CAGCTGCTTCTGCCCACCCCATACCCCCCACCTCAGGCTTAGCTCACACTTCCCAGGCCC
CAATGTGGGGAGGGAGTGGCCANACCTGGTTTCCCTTCTACTGACTCACCATGACCTTGA
GTAAGTCACTTCCCCTCAAGGGTGTCACTTCCCCATGCCCATTGTAAGGGGTTGAATTGA
ACTGGAGGTAAGATAGGGGATCCAGACCCTAAACCCAGCCAGAGGGTCAGGGAGTCTTTC
CAGCCTGAGGTGGGCTCCAGCCCTCANCAGAGGTAGCCTGGTAGGGTCAGAGTCCTGGCG
CTGCCTCTTGAGTTGCTAGCTGGGTGACTTGCANCAAGTTACTTAACCTCTCTGTTTTCC
CATGTGTGAAATAGCTATATTCCTAGACTCTACTCCACAGGGTTGTTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGCTGCTTCTGCCCACCCCATACCCCCCACCTCAGGCTTAGCTCACACTTCCCAGGCCC
CAATGTGGGGAGGGAGTGGCCANACCTGGTTTCCCTTCTACTGACTCACCATGACCTTGA
GTAAGTCACTTCCCCTCAAGGGTGTCACTTCCCCATGCCCATTGTAAGGGGTTGAATTGA
ACTGGAGGTAAGATAGGGGATCCAGACCCTAAACCCAGCCAGAGGGTCAGGGAGTCTTTC
CAGCCTGAGGTGGGCTCCAGCCCTCANCAGAGGTAGCCTGGTAGGGTCAGAGTCCTGGCG
CTGCCTCTTGAGTTGCTAGCTGGGTGACTTGCANCAAGTTACTTAACCTCTCTGTTTTCC
CATGTGTGAAATAGCTATATTCCTAGACTCTACTCCACAGGGTTGTTGG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               74-184, - strand, RNAz p=0.659304

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               74-184, - strand, RNAz p=0.659304

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-250, gnl|bosTau2|chr7 (21767659-21767404)
               

               
               1-250, gnl|Hg17|chr5 (176854154-176853928)
               

               
               1-250, gnl|Mm7|chr13 (54598502-54598258)
               


               
               263-407, gnl|bosTau2|chr7 (21767166-21767024)
               

               
               263-407, gnl|Mm7|chr13 (54597965-54597821)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-250, gnl|bosTau2|chr7 (21767659-21767404)
               

               
               1-250, gnl|Hg17|chr5 (176854154-176853928)
               

               
               1-250, gnl|Mm7|chr13 (54598502-54598258)
               


               
               263-407, gnl|bosTau2|chr7 (21767166-21767024)
               

               
               263-407, gnl|Mm7|chr13 (54597965-54597821)

	1-250, gnl\|bosTau2\|chr7 (21767659-21767404)
	1-250, gnl\|Hg17\|chr5 (176854154-176853928)
	1-250, gnl\|Mm7\|chr13 (54598502-54598258)

	263-407, gnl\|bosTau2\|chr7 (21767166-21767024)
	263-407, gnl\|Mm7\|chr13 (54597965-54597821)