Non-Coding RNA Search

Pig1-73H13

Sequence:


               
               GTCAGTCCTGCATCAAGACCGTCTCCAGGAACTCCTACAAGTCCCAGCAACCTCACCAGT
GGCCTGAAAACACCTGTACCTGCCACGACAACATCTCACAACCCTCTGGCAAATATCCTC
TCGAAGGTGGAGATCACCCCAGAGAGCATTCTGTCTGCTCTTTCCAAAACCCAGACACAG
TCAGCCCCTGCACTGCAAGGCCTGTCATCTTTACTTCAGAGTGTTACTGGGAACCCAGTT
CCATCCAGTGAAGCTGCATCCCAGAGCACTTCAGCGTCCCCCGCCAACACCACAGTCTCT
AACATAAAAGGAAGAAATTTGCCCTCCAATACCCAATCCTTTATTTCCAAAGGCTTCAGC
TATTCTCCTAATTCATCAACTTCTGAAGTCTCTTCAACTTCAGCCAGCAAGGCCTCGATT
GGGCAAAGCCCAGGGCTCCCAAGCACTACTTTCAAGCTCCCATCCAACACTCTGGGGTTT
ACAAGTACCCACAATACTAGCCCTGCTGCCCCACCTACTGAAGTTGCCATGTGCCAATCT
TC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCAGTCCTGCATCAAGACCGTCTCCAGGAACTCCTACAAGTCCCAGCAACCTCACCAGT
GGCCTGAAAACACCTGTACCTGCCACGACAACATCTCACAACCCTCTGGCAAATATCCTC
TCGAAGGTGGAGATCACCCCAGAGAGCATTCTGTCTGCTCTTTCCAAAACCCAGACACAG
TCAGCCCCTGCACTGCAAGGCCTGTCATCTTTACTTCAGAGTGTTACTGGGAACCCAGTT
CCATCCAGTGAAGCTGCATCCCAGAGCACTTCAGCGTCCCCCGCCAACACCACAGTCTCT
AACATAAAAGGAAGAAATTTGCCCTCCAATACCCAATCCTTTATTTCCAAAGGCTTCAGC
TATTCTCCTAATTCATCAACTTCTGAAGTCTCTTCAACTTCAGCCAGCAAGGCCTCGATT
GGGCAAAGCCCAGGGCTCCCAAGCACTACTTTCAAGCTCCCATCCAACACTCTGGGGTTT
ACAAGTACCCACAATACTAGCCCTGCTGCCCCACCTACTGAAGTTGCCATGTGCCAATCT
TC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               80-199, - strand, RNAz p=0.512608
               

               
               305-504, - strand, RNAz p=0.972322

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-199, - strand, RNAz p=0.512608
               

               
               305-504, - strand, RNAz p=0.972322

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-200, gnl|bosTau2|chr3 (17033834-17033635)
               

               
               1-200, gnl|Hg17|chr1 (147250078-147250277)
               

               
               1-200, gnl|Mm7|chr3 (95646144-95645945)
               


               
               225-542, gnl|bosTau2|chr3 (17030394-17030077)
               

               
               225-542, gnl|Hg17|chr1 (147256137-147256452)
               

               
               225-542, gnl|Mm7|chr3 (95640345-95640028)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-200, gnl|bosTau2|chr3 (17033834-17033635)
               

               
               1-200, gnl|Hg17|chr1 (147250078-147250277)
               

               
               1-200, gnl|Mm7|chr3 (95646144-95645945)
               


               
               225-542, gnl|bosTau2|chr3 (17030394-17030077)
               

               
               225-542, gnl|Hg17|chr1 (147256137-147256452)
               

               
               225-542, gnl|Mm7|chr3 (95640345-95640028)

	80-199, - strand, RNAz p=0.512608
	305-504, - strand, RNAz p=0.972322

	1-200, gnl\|bosTau2\|chr3 (17033834-17033635)
	1-200, gnl\|Hg17\|chr1 (147250078-147250277)
	1-200, gnl\|Mm7\|chr3 (95646144-95645945)

	225-542, gnl\|bosTau2\|chr3 (17030394-17030077)
	225-542, gnl\|Hg17\|chr1 (147256137-147256452)
	225-542, gnl\|Mm7\|chr3 (95640345-95640028)