Pig1-73O21
|
ATCGAGCTGATGCGAGACGCCCGCATCTGCGCCTTCCTGTGGCGCAAGAAGTGGCTGGGC
CAGTGGGCCAAGCAGCTGTGCGTCATCAAGGACACCAGGCTCCTGTGTTACAAATCCTCC
AAGGACCACAGTCCCCAGCTGGACGTGAACTTGCTGGGCAGCAGCGTGGTGCACAAGGAG
AAGCAGGTGCGGAAGAAGGAGCACAAGCTGAAGATCACGCCAATGAACGCAGATGTGATC
GTGCTGGGCCTGCAGAGCAAGGACCAAGCTGAGCAGTGGCTCAGGGTCATCCAGGAGGTG
AGCGGCCTACCTTCCGAAGGAACATCCGAGGGAAACCAGTACAGCCCAGATGCCCAGCGC
CTGAGCTGTCCAAAACCAGATATCAACGAGAAGTACCTGTCCGCCTCGGAGTACGGAAGC
TCCACAGATGGCCACCCTGAGGTCCCGGAGACCAAAGATGTCAAGAAAAAATGTTCTGCT
GGCCTCAAGCTGAGCAACCTGATGAACCTGGGCAGGAAGAAATCTACCTCCCTGGAACCT
C
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
ATCGAGCTGATGCGAGACGCCCGCATCTGCGCCTTCCTGTGGCGCAAGAAGTGGCTGGGC
CAGTGGGCCAAGCAGCTGTGCGTCATCAAGGACACCAGGCTCCTGTGTTACAAATCCTCC
AAGGACCACAGTCCCCAGCTGGACGTGAACTTGCTGGGCAGCAGCGTGGTGCACAAGGAG
AAGCAGGTGCGGAAGAAGGAGCACAAGCTGAAGATCACGCCAATGAACGCAGATGTGATC
GTGCTGGGCCTGCAGAGCAAGGACCAAGCTGAGCAGTGGCTCAGGGTCATCCAGGAGGTG
AGCGGCCTACCTTCCGAAGGAACATCCGAGGGAAACCAGTACAGCCCAGATGCCCAGCGC
CTGAGCTGTCCAAAACCAGATATCAACGAGAAGTACCTGTCCGCCTCGGAGTACGGAAGC
TCCACAGATGGCCACCCTGAGGTCCCGGAGACCAAAGATGTCAAGAAAAAATGTTCTGCT
GGCCTCAAGCTGAGCAACCTGATGAACCTGGGCAGGAAGAAATCTACCTCCCTGGAACCT
C
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
105-287, gnl|bosTau2|chr26 (21870631-21870449) |
|
105-287, gnl|canFam2|chr28 (28154851-28155054) |
|
105-287, gnl|danRer3|chr12 (29661695-29661509) |
|
105-287, gnl|dasNov1|scaffold_10541 (46233-46030) |
|
105-287, gnl|echTel1|scaffold_276200 (44398-44600) |
|
105-287, gnl|fr1|chrUn (114345763-114345566) |
|
105-287, gnl|galGal2|chr6 (26816019-26816220) |
|
105-287, gnl|hg17|chr10 (116063619-116063822) |
|
105-287, gnl|Hg17|chr10 (116063800-116063618) |
|
105-287, gnl|loxAfr1|scaffold_14671 (7628-7426) |
|
105-287, gnl|mm7|chr19 (56844234-56844432) |
|
105-287, gnl|Mm7|chr19 (56844415-56844233) |
|
105-287, gnl|monDom2|scaffold_14 (47688964-47688763) |
|
105-287, gnl|oryCun1|scaffold_210484 (54517-54315) |
|
105-287, gnl|panTro1|chr8 (118228053-118228256) |
|
105-287, gnl|rheMac2|chr9 (113969677-113969880) |
|
105-287, gnl|rn3|chr1 (263445949-263446147) |
|
105-287, gnl|tetNig1|chr2 (6289402-6289214) |
|
105-287, gnl|xenTro1|scaffold_119 (1433142-1432941) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
105-287, gnl|bosTau2|chr26 (21870631-21870449) |
|
105-287, gnl|canFam2|chr28 (28154851-28155054) |
|
105-287, gnl|danRer3|chr12 (29661695-29661509) |
|
105-287, gnl|dasNov1|scaffold_10541 (46233-46030) |
|
105-287, gnl|echTel1|scaffold_276200 (44398-44600) |
|
105-287, gnl|fr1|chrUn (114345763-114345566) |
|
105-287, gnl|galGal2|chr6 (26816019-26816220) |
|
105-287, gnl|hg17|chr10 (116063619-116063822) |
|
105-287, gnl|Hg17|chr10 (116063800-116063618) |
|
105-287, gnl|loxAfr1|scaffold_14671 (7628-7426) |
|
105-287, gnl|mm7|chr19 (56844234-56844432) |
|
105-287, gnl|Mm7|chr19 (56844415-56844233) |
|
105-287, gnl|monDom2|scaffold_14 (47688964-47688763) |
|
105-287, gnl|oryCun1|scaffold_210484 (54517-54315) |
|
105-287, gnl|panTro1|chr8 (118228053-118228256) |
|
105-287, gnl|rheMac2|chr9 (113969677-113969880) |
|
105-287, gnl|rn3|chr1 (263445949-263446147) |
|
105-287, gnl|tetNig1|chr2 (6289402-6289214) |
|
105-287, gnl|xenTro1|scaffold_119 (1433142-1432941) |
