Non-Coding RNA Search

Pig1-75B21

Sequence:


               
               CGGACGCGTGGGTCGACCCACGCGTCCGGGGTATTGACCACCCGGACCCACTCTGGATCC
CATTCAAAGAGGCAGCAGTGACCCTCATTTACCAGCTGGCAGAGGGCCCTGAGGCAATCT
GTGCCCAGATGTTGCAGGGCTGTGCAAAGCAGGCCCTGGAGAAACTGGAGGAGAAGAGCC
CTCCCCAGGAGGCCCCGAAAGACACCCCCATGCTCCCCACTTTCCTGTTGATAGAACCTG
CTGTCCCTGGGTGGGGATGTGGCTCTGCAGCAGCTGGTGCACCTGGAGCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGACGCGTGGGTCGACCCACGCGTCCGGGGTATTGACCACCCGGACCCACTCTGGATCC
CATTCAAAGAGGCAGCAGTGACCCTCATTTACCAGCTGGCAGAGGGCCCTGAGGCAATCT
GTGCCCAGATGTTGCAGGGCTGTGCAAAGCAGGCCCTGGAGAAACTGGAGGAGAAGAGCC
CTCCCCAGGAGGCCCCGAAAGACACCCCCATGCTCCCCACTTTCCTGTTGATAGAACCTG
CTGTCCCTGGGTGGGGATGTGGCTCTGCAGCAGCTGGTGCACCTGGAGCAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               71-196, - strand, RNAz p=0.766341

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               71-196, - strand, RNAz p=0.766341

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               38-196, gnl|bosTau2|chr5 (60644312-60644154)
               

               
               38-196, gnl|canFam2|chr27 (41508567-41508415)
               

               
               38-196, gnl|danRer3|chr2 (40305531-40305685)
               

               
               38-196, gnl|dasNov1|scaffold_4087 (98033-98184)
               

               
               38-196, gnl|echTel1|scaffold_45045 (6607-6455)
               

               
               38-196, gnl|galGal2|chr1 (70999619-70999762)
               

               
               38-196, gnl|hg17|chr12 (6505877-6506029)
               

               
               38-196, gnl|Hg17|chr12 (6505882-6506040)
               

               
               38-196, gnl|loxAfr1|scaffold_112921 (5037-4885)
               

               
               38-196, gnl|mm7|chr6 (125199612-125199463)
               

               
               38-196, gnl|Mm7|chr6 (125199605-125199450)
               

               
               38-196, gnl|monDom2|scaffold_31 (14922880-14923033)
               

               
               38-196, gnl|oryCun1|scaffold_199228 (68221-68373)
               

               
               38-196, gnl|panTro1|chr10 (7040634-7040786)
               

               
               38-196, gnl|rheMac2|chr11 (6677759-6677911)
               

               
               38-196, gnl|rn3|chr4 (161539433-161539284)
               

               
               38-196, gnl|xenTro1|scaffold_991 (76526-76393)

Aligned organism(s): 17 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               38-196, gnl|bosTau2|chr5 (60644312-60644154)
               

               
               38-196, gnl|canFam2|chr27 (41508567-41508415)
               

               
               38-196, gnl|danRer3|chr2 (40305531-40305685)
               

               
               38-196, gnl|dasNov1|scaffold_4087 (98033-98184)
               

               
               38-196, gnl|echTel1|scaffold_45045 (6607-6455)
               

               
               38-196, gnl|galGal2|chr1 (70999619-70999762)
               

               
               38-196, gnl|hg17|chr12 (6505877-6506029)
               

               
               38-196, gnl|Hg17|chr12 (6505882-6506040)
               

               
               38-196, gnl|loxAfr1|scaffold_112921 (5037-4885)
               

               
               38-196, gnl|mm7|chr6 (125199612-125199463)
               

               
               38-196, gnl|Mm7|chr6 (125199605-125199450)
               

               
               38-196, gnl|monDom2|scaffold_31 (14922880-14923033)
               

               
               38-196, gnl|oryCun1|scaffold_199228 (68221-68373)
               

               
               38-196, gnl|panTro1|chr10 (7040634-7040786)
               

               
               38-196, gnl|rheMac2|chr11 (6677759-6677911)
               

               
               38-196, gnl|rn3|chr4 (161539433-161539284)
               

               
               38-196, gnl|xenTro1|scaffold_991 (76526-76393)

	38-196, gnl\|bosTau2\|chr5 (60644312-60644154)
	38-196, gnl\|canFam2\|chr27 (41508567-41508415)
	38-196, gnl\|danRer3\|chr2 (40305531-40305685)
	38-196, gnl\|dasNov1\|scaffold_4087 (98033-98184)
	38-196, gnl\|echTel1\|scaffold_45045 (6607-6455)
	38-196, gnl\|galGal2\|chr1 (70999619-70999762)
	38-196, gnl\|hg17\|chr12 (6505877-6506029)
	38-196, gnl\|Hg17\|chr12 (6505882-6506040)
	38-196, gnl\|loxAfr1\|scaffold_112921 (5037-4885)
	38-196, gnl\|mm7\|chr6 (125199612-125199463)
	38-196, gnl\|Mm7\|chr6 (125199605-125199450)
	38-196, gnl\|monDom2\|scaffold_31 (14922880-14923033)
	38-196, gnl\|oryCun1\|scaffold_199228 (68221-68373)
	38-196, gnl\|panTro1\|chr10 (7040634-7040786)
	38-196, gnl\|rheMac2\|chr11 (6677759-6677911)
	38-196, gnl\|rn3\|chr4 (161539433-161539284)
	38-196, gnl\|xenTro1\|scaffold_991 (76526-76393)