Non-Coding RNA Search

Pig1-75I18

Sequence:


               
               AACATACTGGCCATCAACAAGCCCCAAAACAAGTGTGATGACCTGGACCGGTTTGTGATG
GTGGCCAAGACGGTGCCGGATGATGCCAAGCAGCTCACCACAACCATCAACACCAACGCA
GAAGCGCTCTTCATACCCGGCCCTGGCAGCTCCCAGGGGAAAACTGGGCCCGAGAACACC
GAGTACCCTCACACGGGCTCCCAGATGCACCTGCTGCATCCCGGGGACCATAAGACTCCC
GGTCTCAACAAGCCATTGCCCCCGAGCCTGGGCAAGGACCAGCCCCCTGACTGTAGCAGC
AGTGATGGCTCGGAGAGGAGCTGGATGGATGACTATGACTACGTCCACCTCCAGGGTAAG
GAGGAGTTTGAGAGGCAACAGAAAGAGCTCTTGGAAAAGGAAAACATCATCAAGCAGAAC
AAGATGCAGCTGGAACACCACCAGCTGAGTCAGTTCCAGCTGCTGGAACAAGAAATCACC
AAGCCCGTGGAGAACGACATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACATACTGGCCATCAACAAGCCCCAAAACAAGTGTGATGACCTGGACCGGTTTGTGATG
GTGGCCAAGACGGTGCCGGATGATGCCAAGCAGCTCACCACAACCATCAACACCAACGCA
GAAGCGCTCTTCATACCCGGCCCTGGCAGCTCCCAGGGGAAAACTGGGCCCGAGAACACC
GAGTACCCTCACACGGGCTCCCAGATGCACCTGCTGCATCCCGGGGACCATAAGACTCCC
GGTCTCAACAAGCCATTGCCCCCGAGCCTGGGCAAGGACCAGCCCCCTGACTGTAGCAGC
AGTGATGGCTCGGAGAGGAGCTGGATGGATGACTATGACTACGTCCACCTCCAGGGTAAG
GAGGAGTTTGAGAGGCAACAGAAAGAGCTCTTGGAAAAGGAAAACATCATCAAGCAGAAC
AAGATGCAGCTGGAACACCACCAGCTGAGTCAGTTCCAGCTGCTGGAACAAGAAATCACC
AAGCCCGTGGAGAACGACATG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|13435651|gb|AAH04696.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|13435651|gb|AAH04696.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               160-307, - strand, RNAz p=0.987078

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               160-307, - strand, RNAz p=0.987078

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               1-360, gnl|bosTau2|chr23 (34861568-34861927)
               

               
               1-360, gnl|canFam2|chr35 (13866348-13866582)
               

               
               1-360, gnl|danRer3|chr19 (718882-718711)
               

               
               1-360, gnl|echTel1|scaffold_316233 (73647-73446)
               

               
               1-360, gnl|fr1|chrUn (86103424-86103604)
               

               
               1-360, gnl|galGal2|chr2 (62857087-62856867)
               

               
               1-360, gnl|hg17|chr6 (11298179-11298413)
               

               
               1-360, gnl|Hg17|chr6 (11298548-11298177)
               

               
               1-360, gnl|loxAfr1|scaffold_19368 (21741-21532)
               

               
               1-360, gnl|mm7|chr13 (40754729-40754963)
               

               
               1-360, gnl|Mm7|chr13 (40755098-40754730)
               

               
               1-360, gnl|monDom2|scaffold_3 (98223690-98223924)
               

               
               1-360, gnl|oryCun1|scaffold_209819 (153989-153755)
               

               
               1-360, gnl|panTro1|chr5 (11569777-11570011)
               

               
               1-360, gnl|rheMac2|chr4 (11160187-11160421)
               

               
               1-360, gnl|rn3|chr17 (29351486-29351252)
               

               
               1-360, gnl|tetNig1|chrUn_random (150347586-150347748)
               

               
               1-360, gnl|xenTro1|scaffold_278 (725314-725098)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-360, gnl|bosTau2|chr23 (34861568-34861927)
               

               
               1-360, gnl|canFam2|chr35 (13866348-13866582)
               

               
               1-360, gnl|danRer3|chr19 (718882-718711)
               

               
               1-360, gnl|echTel1|scaffold_316233 (73647-73446)
               

               
               1-360, gnl|fr1|chrUn (86103424-86103604)
               

               
               1-360, gnl|galGal2|chr2 (62857087-62856867)
               

               
               1-360, gnl|hg17|chr6 (11298179-11298413)
               

               
               1-360, gnl|Hg17|chr6 (11298548-11298177)
               

               
               1-360, gnl|loxAfr1|scaffold_19368 (21741-21532)
               

               
               1-360, gnl|mm7|chr13 (40754729-40754963)
               

               
               1-360, gnl|Mm7|chr13 (40755098-40754730)
               

               
               1-360, gnl|monDom2|scaffold_3 (98223690-98223924)
               

               
               1-360, gnl|oryCun1|scaffold_209819 (153989-153755)
               

               
               1-360, gnl|panTro1|chr5 (11569777-11570011)
               

               
               1-360, gnl|rheMac2|chr4 (11160187-11160421)
               

               
               1-360, gnl|rn3|chr17 (29351486-29351252)
               

               
               1-360, gnl|tetNig1|chrUn_random (150347586-150347748)
               

               
               1-360, gnl|xenTro1|scaffold_278 (725314-725098)

	1-360, gnl\|bosTau2\|chr23 (34861568-34861927)
	1-360, gnl\|canFam2\|chr35 (13866348-13866582)
	1-360, gnl\|danRer3\|chr19 (718882-718711)
	1-360, gnl\|echTel1\|scaffold_316233 (73647-73446)
	1-360, gnl\|fr1\|chrUn (86103424-86103604)
	1-360, gnl\|galGal2\|chr2 (62857087-62856867)
	1-360, gnl\|hg17\|chr6 (11298179-11298413)
	1-360, gnl\|Hg17\|chr6 (11298548-11298177)
	1-360, gnl\|loxAfr1\|scaffold_19368 (21741-21532)
	1-360, gnl\|mm7\|chr13 (40754729-40754963)
	1-360, gnl\|Mm7\|chr13 (40755098-40754730)
	1-360, gnl\|monDom2\|scaffold_3 (98223690-98223924)
	1-360, gnl\|oryCun1\|scaffold_209819 (153989-153755)
	1-360, gnl\|panTro1\|chr5 (11569777-11570011)
	1-360, gnl\|rheMac2\|chr4 (11160187-11160421)
	1-360, gnl\|rn3\|chr17 (29351486-29351252)
	1-360, gnl\|tetNig1\|chrUn_random (150347586-150347748)
	1-360, gnl\|xenTro1\|scaffold_278 (725314-725098)