Non-Coding RNA Search

Pig1-76D11

Sequence:


               
               ATACGATTCAACAGTTGCAGGCAGGAAGTTTTACAGGCATTACTGCCAGTGGCAGCAATG
GAAATGTTGACTTGGTCCAACAGGTTTTAGAGGCACAACAACAGTTATCTTCATTTTTAT
TTTCTGCTCCAGATAGTAATGAGAATGTTCAAGAACAGCTTAGTGCAGACATTTTTCAAC
AAGTCAGTACAAATTCAAAATATCGTAAGCCCTGGAATGTTTTCCTCAACAGAGCCAGCA
GTCCATACCAGACCATATAATTTAATAGCTGGAAGAGCTGAAAGTGTTCACCCACAGACT
GAAAATGCGTTATCTAATCAACAGCAGCAGCAACAGCAACAGCAAGTGATGGAATCATCA
GCTGCAATGGTGATGGAGATGCAACAGAGTATCTGCCAGGCAGCTGCCCAGATTCAGTCA
GAGCTATTTCCTTCAACTGGCTCAGCAAATGGAAACCTTCAGCAGTCCCCAGTTTACCAG
CAGACTTCCCACATGATGAGTGCATTATCTACCAATGAGGACATGCAAATGCAATGTGAA
TTGTGGTCTTCTCCTCCTGCAGTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATACGATTCAACAGTTGCAGGCAGGAAGTTTTACAGGCATTACTGCCAGTGGCAGCAATG
GAAATGTTGACTTGGTCCAACAGGTTTTAGAGGCACAACAACAGTTATCTTCATTTTTAT
TTTCTGCTCCAGATAGTAATGAGAATGTTCAAGAACAGCTTAGTGCAGACATTTTTCAAC
AAGTCAGTACAAATTCAAAATATCGTAAGCCCTGGAATGTTTTCCTCAACAGAGCCAGCA
GTCCATACCAGACCATATAATTTAATAGCTGGAAGAGCTGAAAGTGTTCACCCACAGACT
GAAAATGCGTTATCTAATCAACAGCAGCAGCAACAGCAACAGCAAGTGATGGAATCATCA
GCTGCAATGGTGATGGAGATGCAACAGAGTATCTGCCAGGCAGCTGCCCAGATTCAGTCA
GAGCTATTTCCTTCAACTGGCTCAGCAAATGGAAACCTTCAGCAGTCCCCAGTTTACCAG
CAGACTTCCCACATGATGAGTGCATTATCTACCAATGAGGACATGCAAATGCAATGTGAA
TTGTGGTCTTCTCCTCCTGCAGTTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               320-516, - strand, RNAz p=0.516826

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               320-516, - strand, RNAz p=0.516826

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               342-430, + strand, RNAmicro p=0.993558

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               342-430, + strand, RNAmicro p=0.993558

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-565, gnl|bosTau2|chr18 (30309290-30309853)
               

               
               1-565, gnl|Hg17|chr16 (68283601-68284167)
               

               
               1-565, gnl|Mm7|chr8 (105967637-105968200)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-565, gnl|bosTau2|chr18 (30309290-30309853)
               

               
               1-565, gnl|Hg17|chr16 (68283601-68284167)
               

               
               1-565, gnl|Mm7|chr8 (105967637-105968200)

	1-565, gnl\|bosTau2\|chr18 (30309290-30309853)
	1-565, gnl\|Hg17\|chr16 (68283601-68284167)
	1-565, gnl\|Mm7\|chr8 (105967637-105968200)