Non-Coding RNA Search

Pig1-76F07

Sequence:


               
               CTTTCTGCTTGACTTTCTCCTCCACTTGTTGCCACTTTTTCTCCTTGCCCTTAAGATTCA
NGGCAGGGTTGGGTAGGGAGGTGTCCAGCTGGGCTAGGGGTGGAGCCACCTGTTCACTGC
TTGGGAGTCTTAACCTGACCAAGGAGAAAGATCTGGCTGCTTAAATTTAGCTGAGACTGA
AGTCCGTATGGCCTTCCTACTGGAGGCTAGCATTTTGGAGGACACCTTGGACTCCGTGAG
ACTAGAAGGAGCCCCTCCCTTCTTTTTCACTCTCTCTTCCTCCCTATTCTGTATTTTTCA
CTTAGAGTATCTCTCTCCATACTGTTCAACTTTTTTTTCCTTTCCCCTGTTGCTTACTAT
TTTTTATCTTTGTCTTTCTAGCTCTCTGGCAGTGAACTTTATTTAATCTTTGTTTTCTGT
TACCCATTCTTTCCACATATCTGTCTAATCTCTCTCAAAATTTAACTTTACCTTGGCTCT
ATTTTATTCTTTCCTTTATTAATTTTCTCATCCAACTCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTCTGCTTGACTTTCTCCTCCACTTGTTGCCACTTTTTCTCCTTGCCCTTAAGATTCA
NGGCAGGGTTGGGTAGGGAGGTGTCCAGCTGGGCTAGGGGTGGAGCCACCTGTTCACTGC
TTGGGAGTCTTAACCTGACCAAGGAGAAAGATCTGGCTGCTTAAATTTAGCTGAGACTGA
AGTCCGTATGGCCTTCCTACTGGAGGCTAGCATTTTGGAGGACACCTTGGACTCCGTGAG
ACTAGAAGGAGCCCCTCCCTTCTTTTTCACTCTCTCTTCCTCCCTATTCTGTATTTTTCA
CTTAGAGTATCTCTCTCCATACTGTTCAACTTTTTTTTCCTTTCCCCTGTTGCTTACTAT
TTTTTATCTTTGTCTTTCTAGCTCTCTGGCAGTGAACTTTATTTAATCTTTGTTTTCTGT
TACCCATTCTTTCCACATATCTGTCTAATCTCTCTCAAAATTTAACTTTACCTTGGCTCT
ATTTTATTCTTTCCTTTATTAATTTTCTCATCCAACTCTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-129, + strand, RNAz p=0.999556

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-129, + strand, RNAz p=0.999556

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               30-129, + strand, RNAmicro p=0.991909

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               30-129, + strand, RNAmicro p=0.991909

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-519, gnl|bosTau2|chr17 (36832410-36831887)
               

               
               1-519, gnl|Hg17|chr12 (110906704-110906096)
               

               
               1-519, gnl|Mm7|chr5 (120697012-120697508)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-519, gnl|bosTau2|chr17 (36832410-36831887)
               

               
               1-519, gnl|Hg17|chr12 (110906704-110906096)
               

               
               1-519, gnl|Mm7|chr5 (120697012-120697508)

	1-519, gnl\|bosTau2\|chr17 (36832410-36831887)
	1-519, gnl\|Hg17\|chr12 (110906704-110906096)
	1-519, gnl\|Mm7\|chr5 (120697012-120697508)