Non-Coding RNA Search

Pig1-76N01

Sequence:


               
               CTCTGGGGAGCAGGCACATAGGCGAAGGAGAGAAGAGGAGGTTTGGGACTGGGGCCTCNT
TAGCCAAGGCTTGTCAGAAGTGGAGAGGGTCGCTACCAGACTGCAGCTGTACACATTTGA
GGTGGCCTGAGATGGAGCAGAGGTTTTGTCAGCCTCGGACTGAGGAGCTCAGAGGAGGGC
CTCAGAGCAGGGGAGGCTGCTCAGAGCTCGCCATGGCCTTGGCCAAGTACAGGCAGAGAG
GACTGTTCTGCTCGGGAACAGGCCTCCAGGTAGGCTGGGACCAGGCCCCACCTGGTGGAG
TTGGAGCAGGGGACACTGCCAGGCATCTGAGAGCCTGGCTGGCAGGCTCAACGAGGTGGG
GAGAGCCATTTTTGCTGGTCAGGGTACAAAATGAGCCATTGGCAGGCCCAGAGAGCCTCA
GCAAGGTTAAAATATTAATGCAAACTACACTGTCTTTATCTCTGGAAAAACCTCTGGGCC
TTGATATCCGAGAAATACACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCTGGGGAGCAGGCACATAGGCGAAGGAGAGAAGAGGAGGTTTGGGACTGGGGCCTCNT
TAGCCAAGGCTTGTCAGAAGTGGAGAGGGTCGCTACCAGACTGCAGCTGTACACATTTGA
GGTGGCCTGAGATGGAGCAGAGGTTTTGTCAGCCTCGGACTGAGGAGCTCAGAGGAGGGC
CTCAGAGCAGGGGAGGCTGCTCAGAGCTCGCCATGGCCTTGGCCAAGTACAGGCAGAGAG
GACTGTTCTGCTCGGGAACAGGCCTCCAGGTAGGCTGGGACCAGGCCCCACCTGGTGGAG
TTGGAGCAGGGGACACTGCCAGGCATCTGAGAGCCTGGCTGGCAGGCTCAACGAGGTGGG
GAGAGCCATTTTTGCTGGTCAGGGTACAAAATGAGCCATTGGCAGGCCCAGAGAGCCTCA
GCAAGGTTAAAATATTAATGCAAACTACACTGTCTTTATCTCTGGAAAAACCTCTGGGCC
TTGATATCCGAGAAATACACT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               226-501, + strand, RNAz p=0.937221
               

               
               361-501, - strand, RNAz p=0.975998

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               226-501, + strand, RNAz p=0.937221
               

               
               361-501, - strand, RNAz p=0.975998

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

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               114-501, gnl|bosTau2|chr8 (40855155-40855523)
               

               
               114-501, gnl|canFam2|chr20 (8653472-8653028)
               

               
               114-501, gnl|echTel1|scaffold_313045 (68403-67943)
               

               
               114-501, gnl|hg17|chr3 (130715308-130715701)
               

               
               114-501, gnl|Hg17|chr3 (130715350-130715770)
               

               
               114-501, gnl|loxAfr1|scaffold_12459 (48697-49066)
               

               
               114-501, gnl|monDom2|scaffold_5 (40531920-40532375)
               

               
               114-501, gnl|oryCun1|scaffold_213711 (11840-11453)
               

               
               114-501, gnl|panTro1|chr2 (132771465-132771863)
               

               
               114-501, gnl|rheMac2|chr11 (85303214-85302816)
               

               
               114-501, gnl|xenTro1|scaffold_318 (300760-300406)

Aligned organism(s): 11 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               114-501, gnl|bosTau2|chr8 (40855155-40855523)
               

               
               114-501, gnl|canFam2|chr20 (8653472-8653028)
               

               
               114-501, gnl|echTel1|scaffold_313045 (68403-67943)
               

               
               114-501, gnl|hg17|chr3 (130715308-130715701)
               

               
               114-501, gnl|Hg17|chr3 (130715350-130715770)
               

               
               114-501, gnl|loxAfr1|scaffold_12459 (48697-49066)
               

               
               114-501, gnl|monDom2|scaffold_5 (40531920-40532375)
               

               
               114-501, gnl|oryCun1|scaffold_213711 (11840-11453)
               

               
               114-501, gnl|panTro1|chr2 (132771465-132771863)
               

               
               114-501, gnl|rheMac2|chr11 (85303214-85302816)
               

               
               114-501, gnl|xenTro1|scaffold_318 (300760-300406)

	226-501, + strand, RNAz p=0.937221
	361-501, - strand, RNAz p=0.975998

	114-501, gnl\|bosTau2\|chr8 (40855155-40855523)
	114-501, gnl\|canFam2\|chr20 (8653472-8653028)
	114-501, gnl\|echTel1\|scaffold_313045 (68403-67943)
	114-501, gnl\|hg17\|chr3 (130715308-130715701)
	114-501, gnl\|Hg17\|chr3 (130715350-130715770)
	114-501, gnl\|loxAfr1\|scaffold_12459 (48697-49066)
	114-501, gnl\|monDom2\|scaffold_5 (40531920-40532375)
	114-501, gnl\|oryCun1\|scaffold_213711 (11840-11453)
	114-501, gnl\|panTro1\|chr2 (132771465-132771863)
	114-501, gnl\|rheMac2\|chr11 (85303214-85302816)
	114-501, gnl\|xenTro1\|scaffold_318 (300760-300406)