Non-Coding RNA Search

Pig1-78B23

Sequence:


               
               CCGAACCGCTGCCTGACTTTACTCGAGCAGGGGGCGGGGCGGGAATCANTCGGCTGCTCA
AAGCGCGCCTTTGCCCCAGAACCTCTGCCTCCGTCTTGGCCTTGAGCTCTCTCCCGAGTA
ATTGGGATGGCTGCGGTCCCACCGGGGTTAATCAGGAAAGGTTTCCTGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGAACCGCTGCCTGACTTTACTCGAGCAGGGGGCGGGGCGGGAATCANTCGGCTGCTCA
AAGCGCGCCTTTGCCCCAGAACCTCTGCCTCCGTCTTGGCCTTGAGCTCTCTCCCGAGTA
ATTGGGATGGCTGCGGTCCCACCGGGGTTAATCAGGAAAGGTTTCCTGAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               24-117, - strand, RNAz p=0.992228

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               24-117, - strand, RNAz p=0.992228

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AB022434, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AB022434, -

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               3-170, gnl|bosTau2|chr3 (16472840-16473009)
               

               
               3-170, gnl|canFam2|chr17 (63274849-63275477)
               

               
               3-170, gnl|dasNov1|scaffold_81156 (2967-2199)
               

               
               3-170, gnl|echTel1|scaffold_312232 (107702-106938)
               

               
               3-170, gnl|hg17|chr1 (147917402-147918113)
               

               
               3-170, gnl|Hg17|chr1 (147917605-147917451)
               

               
               3-170, gnl|mm7|chr3 (95047831-95047165)
               

               
               3-170, gnl|Mm7|chr3 (95047603-95047778)
               

               
               3-170, gnl|monDom2|scaffold_44 (4312730-4313461)
               

               
               3-170, gnl|panTro1|chr1 (129652188-129652899)
               

               
               3-170, gnl|rheMac2|chr1 (129556693-129557405)
               

               
               3-170, gnl|rn3|chr2 (190041856-190041172)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-170, gnl|bosTau2|chr3 (16472840-16473009)
               

               
               3-170, gnl|canFam2|chr17 (63274849-63275477)
               

               
               3-170, gnl|dasNov1|scaffold_81156 (2967-2199)
               

               
               3-170, gnl|echTel1|scaffold_312232 (107702-106938)
               

               
               3-170, gnl|hg17|chr1 (147917402-147918113)
               

               
               3-170, gnl|Hg17|chr1 (147917605-147917451)
               

               
               3-170, gnl|mm7|chr3 (95047831-95047165)
               

               
               3-170, gnl|Mm7|chr3 (95047603-95047778)
               

               
               3-170, gnl|monDom2|scaffold_44 (4312730-4313461)
               

               
               3-170, gnl|panTro1|chr1 (129652188-129652899)
               

               
               3-170, gnl|rheMac2|chr1 (129556693-129557405)
               

               
               3-170, gnl|rn3|chr2 (190041856-190041172)

	3-170, gnl\|bosTau2\|chr3 (16472840-16473009)
	3-170, gnl\|canFam2\|chr17 (63274849-63275477)
	3-170, gnl\|dasNov1\|scaffold_81156 (2967-2199)
	3-170, gnl\|echTel1\|scaffold_312232 (107702-106938)
	3-170, gnl\|hg17\|chr1 (147917402-147918113)
	3-170, gnl\|Hg17\|chr1 (147917605-147917451)
	3-170, gnl\|mm7\|chr3 (95047831-95047165)
	3-170, gnl\|Mm7\|chr3 (95047603-95047778)
	3-170, gnl\|monDom2\|scaffold_44 (4312730-4313461)
	3-170, gnl\|panTro1\|chr1 (129652188-129652899)
	3-170, gnl\|rheMac2\|chr1 (129556693-129557405)
	3-170, gnl\|rn3\|chr2 (190041856-190041172)