Non-Coding RNA Search

Pig1-79J12

Sequence:


               
               GCCCTGCAGGGCAATGGGCTGGCCATCCTGCAGGTGGACCTGCCCTGCTTCAGCTGCCTC
AAGCGGCTCAATCTGGCCGAGAACCGCCTGAGCCGCCTGCCTGCCTGGACGCAGGCCGTG
TCCCTGGAGGTGCTGGACCTGAGAAACAACAGCTTCAGCCTCCTGCCAGGCAGTGCCATG
GGCGGCCTGGAGACCAGCCTCCGGCGCCTCTACCTGCAGGGGAATCCGCTCAGCTGCTGT
GGCAACGGCTGGCTGGCGGCCCAGCTGCACCAGGGCCGTGTGGACGTGGACGCCACCCAG
GACCTGACCTGCCATTTCGGCTCCCAGGAGGCGGTGTCCCTGAGCCACGTGCGGCCATGA
GACTGTGAGAAGGGGGGGCTCAAGAACGTCAACCTCGTCATCATCCTCACGTTCGCCCTG
GTGGCCGCCGTCCTCCTCACCACGCTGGCCACCTGCTGCTGTGTCCGCCGGCAGAAGTTC
AGCCAGCAGTACAAAGCCTAGAGAGGCTGGGGGCTGCGGACCAGCTCAGCCAGGAGACCC
TTCCAGGTCAGTGGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCCTGCAGGGCAATGGGCTGGCCATCCTGCAGGTGGACCTGCCCTGCTTCAGCTGCCTC
AAGCGGCTCAATCTGGCCGAGAACCGCCTGAGCCGCCTGCCTGCCTGGACGCAGGCCGTG
TCCCTGGAGGTGCTGGACCTGAGAAACAACAGCTTCAGCCTCCTGCCAGGCAGTGCCATG
GGCGGCCTGGAGACCAGCCTCCGGCGCCTCTACCTGCAGGGGAATCCGCTCAGCTGCTGT
GGCAACGGCTGGCTGGCGGCCCAGCTGCACCAGGGCCGTGTGGACGTGGACGCCACCCAG
GACCTGACCTGCCATTTCGGCTCCCAGGAGGCGGTGTCCCTGAGCCACGTGCGGCCATGA
GACTGTGAGAAGGGGGGGCTCAAGAACGTCAACCTCGTCATCATCCTCACGTTCGCCCTG
GTGGCCGCCGTCCTCCTCACCACGCTGGCCACCTGCTGCTGTGTCCGCCGGCAGAAGTTC
AGCCAGCAGTACAAAGCCTAGAGAGGCTGGGGGCTGCGGACCAGCTCAGCCAGGAGACCC
TTCCAGGTCAGTGGGG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-199, - strand, RNAz p=0.935168

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-199, - strand, RNAz p=0.935168

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               141-243, - strand, RNAmicro p=0.934817

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               141-243, - strand, RNAmicro p=0.934817

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-556, gnl|bosTau2|chr13 (22555155-22555710)
               

               
               1-556, gnl|Hg17|chr11 (76048796-76048265)
               

               
               1-556, gnl|Mm7|chr7 (94531408-94531918)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-556, gnl|bosTau2|chr13 (22555155-22555710)
               

               
               1-556, gnl|Hg17|chr11 (76048796-76048265)
               

               
               1-556, gnl|Mm7|chr7 (94531408-94531918)

	1-556, gnl\|bosTau2\|chr13 (22555155-22555710)
	1-556, gnl\|Hg17\|chr11 (76048796-76048265)
	1-556, gnl\|Mm7\|chr7 (94531408-94531918)