Non-Coding RNA Search

Pig1-79O17

Sequence:


               
               GTCGCGCTCACGTCCATCAACAACATGGTGGCCTTCTTCATGGCCGCCCTCGTGCCCATC
CCTGCCCTGCGGGCCTTCTCCTTGCAGGCGGCCATAGTGGTCGGCTGCAACTTCGCAGCC
GTGATGCTTGTCTTCCCGGCCGTCCTCAGCCTGGACCTGCACCGGCGCCACTGCCAGCGC
CTTGATGTGCTCTGCTGCTTCGCAAGCCCCTGCTCTGCTCGGGTGATTCAGATTCTGCCC
CAGGAGCTGGGGGATGGGACAGTACCCGTGGGCATTGCCCGCTTGACTGCCACCGTTCAA
GCCTTTGCCCACTGTGAAGCCAGCAGCCAGCATGTGGTCACCATCCTGCCTCCCCAAACC
CACCTGGTGCCCCCACCTTCTGACCCTCTGGGCTCTGAGCTCTTCAGCCCGGGAGGGTCC
ACACGGGACCTTCTAGGCCAGGAGGAGGGGACACGGCAGAAGGCAGCCTGCAAGTCCCTG
TCCTGTGCCCACTGGAATCTTGCCCATTTCGCCCGCTCTCAGTTTGCACCCTTGCTGCTC
CAACCCCATGCCAAGGCCATGGTGCTGGTACTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCGCGCTCACGTCCATCAACAACATGGTGGCCTTCTTCATGGCCGCCCTCGTGCCCATC
CCTGCCCTGCGGGCCTTCTCCTTGCAGGCGGCCATAGTGGTCGGCTGCAACTTCGCAGCC
GTGATGCTTGTCTTCCCGGCCGTCCTCAGCCTGGACCTGCACCGGCGCCACTGCCAGCGC
CTTGATGTGCTCTGCTGCTTCGCAAGCCCCTGCTCTGCTCGGGTGATTCAGATTCTGCCC
CAGGAGCTGGGGGATGGGACAGTACCCGTGGGCATTGCCCGCTTGACTGCCACCGTTCAA
GCCTTTGCCCACTGTGAAGCCAGCAGCCAGCATGTGGTCACCATCCTGCCTCCCCAAACC
CACCTGGTGCCCCCACCTTCTGACCCTCTGGGCTCTGAGCTCTTCAGCCCGGGAGGGTCC
ACACGGGACCTTCTAGGCCAGGAGGAGGGGACACGGCAGAAGGCAGCCTGCAAGTCCCTG
TCCTGTGCCCACTGGAATCTTGCCCATTTCGCCCGCTCTCAGTTTGCACCCTTGCTGCTC
CAACCCCATGCCAAGGCCATGGTGCTGGTACTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               269-508, - strand, RNAz p=0.98017

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               269-508, - strand, RNAz p=0.98017

Similar Transcript(s): 1 entry(ies)

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Similar Transcript(s): 1 entry(ies)

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               273-508, UI-M-FY0-cgq-d-19-0-UI.r1 NIH_BMAP_FY0 Mus musculus cDNA clone 
(gb|CF531700.1|), blast E-value=3.9937e-43, identity=84.75%

Similar Transcript(s): 1 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               273-508, UI-M-FY0-cgq-d-19-0-UI.r1 NIH_BMAP_FY0 Mus musculus cDNA clone 
(gb|CF531700.1|), blast E-value=3.9937e-43, identity=84.75%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               190-556, gnl|bosTau2|chr3 (68181056-68180692)
               

               
               190-556, gnl|Hg17|chr1 (44962971-44962607)
               

               
               190-556, gnl|Mm7|chr4 (116486161-116486525)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               190-556, gnl|bosTau2|chr3 (68181056-68180692)
               

               
               190-556, gnl|Hg17|chr1 (44962971-44962607)
               

               
               190-556, gnl|Mm7|chr4 (116486161-116486525)

	190-556, gnl\|bosTau2\|chr3 (68181056-68180692)
	190-556, gnl\|Hg17\|chr1 (44962971-44962607)
	190-556, gnl\|Mm7\|chr4 (116486161-116486525)