Non-Coding RNA Search

Pig1-7J15b

Sequence:


               
               GGTCTGACACAGCCCTTCGCCCAGGCAGGCAGGAGCCTCCCACCCAGCGGGGGCAGCGGG
GGCAGCTTTGGGCCCTCGGACTGGTTCCCACAGACGCTGGACTCGCTCCCGTACACCTCC
CAGGATTGCCTGGACTCAGGCATCGGCTCCCTGGAGAGCCAGATGTCGGAACTGTGGGGG
GTCCGAGGCGGCGGCCCCGGTGAGCCGGGCCCATCCCGGGGTCCTTACACTGGCTACAGC
CCCTACGGGGCCAAGCTCCCAGCCACTCAGGCCTTCTCTGCCTTTGGCCGGCCCGTGGGG
GCCGGCCACTTCAGTGTCCCTGCTGACTACGCGCCCCCACCGTCCGCCTTTCCACCTCGC
GAGTACTGGTCGGAGCCCTACCAGCTGCCCCCACCTGCCCCGGTCCTGCAGGAGCCCCGG
GTGCCGGGCCCTGGGGCCGACAGGGGCCCCTGGGGCGGNGGAAGCAGCCTGGCCAAAGAG
C

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTCTGACACAGCCCTTCGCCCAGGCAGGCAGGAGCCTCCCACCCAGCGGGGGCAGCGGG
GGCAGCTTTGGGCCCTCGGACTGGTTCCCACAGACGCTGGACTCGCTCCCGTACACCTCC
CAGGATTGCCTGGACTCAGGCATCGGCTCCCTGGAGAGCCAGATGTCGGAACTGTGGGGG
GTCCGAGGCGGCGGCCCCGGTGAGCCGGGCCCATCCCGGGGTCCTTACACTGGCTACAGC
CCCTACGGGGCCAAGCTCCCAGCCACTCAGGCCTTCTCTGCCTTTGGCCGGCCCGTGGGG
GCCGGCCACTTCAGTGTCCCTGCTGACTACGCGCCCCCACCGTCCGCCTTTCCACCTCGC
GAGTACTGGTCGGAGCCCTACCAGCTGCCCCCACCTGCCCCGGTCCTGCAGGAGCCCCGG
GTGCCGGGCCCTGGGGCCGACAGGGGCCCCTGGGGCGGNGGAAGCAGCCTGGCCAAAGAG
C

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               120-479, - strand, RNAz p=0.995815
               

               
               126-331, - strand, RNAz p=0.997995

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-479, - strand, RNAz p=0.995815
               

               
               126-331, - strand, RNAz p=0.997995

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               376-479, - strand, RNAmicro p=0.996264

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               376-479, - strand, RNAmicro p=0.996264

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               1-481, gnl|bosTau2|chr3 (75858065-75857585)
               

               
               1-481, gnl|canFam2|chr15 (7983529-7983198)
               

               
               1-481, gnl|danRer3|chr17 (45873405-45873730)
               

               
               1-481, gnl|dasNov1|scaffold_100271 (4890-5221)
               

               
               1-481, gnl|echTel1|scaffold_265556 (6784-7119)
               

               
               1-481, gnl|fr1|chrUn (86094173-86094538)
               

               
               1-481, gnl|galGal2|chr23 (3323147-3322701)
               

               
               1-481, gnl|hg17|chr1 (37617653-37617987)
               

               
               1-481, gnl|Hg17|chr1 (37617682-37618162)
               

               
               1-481, gnl|loxAfr1|scaffold_16123 (37391-37057)
               

               
               1-481, gnl|mm7|chr4 (124564571-124564246)
               

               
               1-481, gnl|Mm7|chr4 (124564540-124564069)
               

               
               1-481, gnl|monDom2|scaffold_43 (12177668-12177295)
               

               
               1-481, gnl|oryCun1|scaffold_201047 (1609-1943)
               

               
               1-481, gnl|panTro1|chr1 (38456566-38456900)
               

               
               1-481, gnl|rheMac2|chr1 (40344780-40345114)
               

               
               1-481, gnl|rn3|chr5 (144469049-144468724)
               

               
               1-481, gnl|tetNig1|chr21_random (77013-76723)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-481, gnl|bosTau2|chr3 (75858065-75857585)
               

               
               1-481, gnl|canFam2|chr15 (7983529-7983198)
               

               
               1-481, gnl|danRer3|chr17 (45873405-45873730)
               

               
               1-481, gnl|dasNov1|scaffold_100271 (4890-5221)
               

               
               1-481, gnl|echTel1|scaffold_265556 (6784-7119)
               

               
               1-481, gnl|fr1|chrUn (86094173-86094538)
               

               
               1-481, gnl|galGal2|chr23 (3323147-3322701)
               

               
               1-481, gnl|hg17|chr1 (37617653-37617987)
               

               
               1-481, gnl|Hg17|chr1 (37617682-37618162)
               

               
               1-481, gnl|loxAfr1|scaffold_16123 (37391-37057)
               

               
               1-481, gnl|mm7|chr4 (124564571-124564246)
               

               
               1-481, gnl|Mm7|chr4 (124564540-124564069)
               

               
               1-481, gnl|monDom2|scaffold_43 (12177668-12177295)
               

               
               1-481, gnl|oryCun1|scaffold_201047 (1609-1943)
               

               
               1-481, gnl|panTro1|chr1 (38456566-38456900)
               

               
               1-481, gnl|rheMac2|chr1 (40344780-40345114)
               

               
               1-481, gnl|rn3|chr5 (144469049-144468724)
               

               
               1-481, gnl|tetNig1|chr21_random (77013-76723)

	120-479, - strand, RNAz p=0.995815
	126-331, - strand, RNAz p=0.997995

	1-481, gnl\|bosTau2\|chr3 (75858065-75857585)
	1-481, gnl\|canFam2\|chr15 (7983529-7983198)
	1-481, gnl\|danRer3\|chr17 (45873405-45873730)
	1-481, gnl\|dasNov1\|scaffold_100271 (4890-5221)
	1-481, gnl\|echTel1\|scaffold_265556 (6784-7119)
	1-481, gnl\|fr1\|chrUn (86094173-86094538)
	1-481, gnl\|galGal2\|chr23 (3323147-3322701)
	1-481, gnl\|hg17\|chr1 (37617653-37617987)
	1-481, gnl\|Hg17\|chr1 (37617682-37618162)
	1-481, gnl\|loxAfr1\|scaffold_16123 (37391-37057)
	1-481, gnl\|mm7\|chr4 (124564571-124564246)
	1-481, gnl\|Mm7\|chr4 (124564540-124564069)
	1-481, gnl\|monDom2\|scaffold_43 (12177668-12177295)
	1-481, gnl\|oryCun1\|scaffold_201047 (1609-1943)
	1-481, gnl\|panTro1\|chr1 (38456566-38456900)
	1-481, gnl\|rheMac2\|chr1 (40344780-40345114)
	1-481, gnl\|rn3\|chr5 (144469049-144468724)
	1-481, gnl\|tetNig1\|chr21_random (77013-76723)