Non-Coding RNA Search

Pig1-80D02

Sequence:


               
               GCACCAGGTGGCGCTGGAGAGCCAGCTTTATGGAAAAACACTGGTCCTAGCCTGGAGCAG
CCTGCGCCCCTGGCAGTTCCTCCTCACAAAGGAGGCGGTGACTTGGCTGTTATAGGACCA
GAAGAAAGTTCCTGGGAGAAAAATAATGATGACAGCTTTCAGATGTCTGGAGCTCAGACC
AGTTCCGAGATGTCCATGTTTGAAATCCCCAGTCCAGACTTCAGTTTCCATGCTGATGAA
TTCCTAGAAGTCTATGTCTCTGCCTCTGAACATCCTAATCACTTCTGGATCCAAATCATT
GGCTCTCGGAGCCTGCAATTGGATAAGCTTATCAGTGAGATGACCCAGCACTATGAAAAC
AGTCTGCCTGAAGACTTGACTGTGCATGTAGGAGACATTGTCGCAGCACCTTTACCTACA
AATGGTTCCTGGTATCGAGCCCAGGTCCTTGGCACCTTGGAGAATGGGAACCTGGACCTC
TACTTTGTTGAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCACCAGGTGGCGCTGGAGAGCCAGCTTTATGGAAAAACACTGGTCCTAGCCTGGAGCAG
CCTGCGCCCCTGGCAGTTCCTCCTCACAAAGGAGGCGGTGACTTGGCTGTTATAGGACCA
GAAGAAAGTTCCTGGGAGAAAAATAATGATGACAGCTTTCAGATGTCTGGAGCTCAGACC
AGTTCCGAGATGTCCATGTTTGAAATCCCCAGTCCAGACTTCAGTTTCCATGCTGATGAA
TTCCTAGAAGTCTATGTCTCTGCCTCTGAACATCCTAATCACTTCTGGATCCAAATCATT
GGCTCTCGGAGCCTGCAATTGGATAAGCTTATCAGTGAGATGACCCAGCACTATGAAAAC
AGTCTGCCTGAAGACTTGACTGTGCATGTAGGAGACATTGTCGCAGCACCTTTACCTACA
AATGGTTCCTGGTATCGAGCCCAGGTCCTTGGCACCTTGGAGAATGGGAACCTGGACCTC
TACTTTGTTGAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|7716418|gb|AAF68379.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|7716418|gb|AAF68379.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               4-122, - strand, RNAz p=0.59034
               

               
               20-128, - strand, RNAz p=0.938702

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               4-122, - strand, RNAz p=0.59034
               

               
               20-128, - strand, RNAz p=0.938702

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               4-205, gnl|bosTau2|chr3 (15064808-15065009)
               

               
               4-205, gnl|canFam2|chr17 (63876993-63877222)
               

               
               4-205, gnl|dasNov1|scaffold_3934 (54507-54739)
               

               
               4-205, gnl|echTel1|scaffold_175204 (4213-4445)
               

               
               4-205, gnl|hg17|chr1 (148564181-148564402)
               

               
               4-205, gnl|Hg17|chr1 (148564435-148564234)
               

               
               4-205, gnl|mm7|chr3 (94300115-94299895)
               

               
               4-205, gnl|Mm7|chr3 (94299860-94300061)
               

               
               4-205, gnl|monDom2|scaffold_44 (5070029-5070270)
               

               
               4-205, gnl|oryCun1|scaffold_212154 (42638-42844)
               

               
               4-205, gnl|panTro1|chr1 (130317610-130317831)
               

               
               4-205, gnl|rheMac2|chr1 (130227140-130227361)
               

               
               4-205, gnl|rn3|chr2 (189351546-189351326)
               


               
               208-366, gnl|bosTau2|chr3 (15066088-15066246)
               

               
               208-366, gnl|Hg17|chr1 (148562146-148561988)
               

               
               208-366, gnl|Mm7|chr3 (94301806-94301964)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-205, gnl|bosTau2|chr3 (15064808-15065009)
               

               
               4-205, gnl|canFam2|chr17 (63876993-63877222)
               

               
               4-205, gnl|dasNov1|scaffold_3934 (54507-54739)
               

               
               4-205, gnl|echTel1|scaffold_175204 (4213-4445)
               

               
               4-205, gnl|hg17|chr1 (148564181-148564402)
               

               
               4-205, gnl|Hg17|chr1 (148564435-148564234)
               

               
               4-205, gnl|mm7|chr3 (94300115-94299895)
               

               
               4-205, gnl|Mm7|chr3 (94299860-94300061)
               

               
               4-205, gnl|monDom2|scaffold_44 (5070029-5070270)
               

               
               4-205, gnl|oryCun1|scaffold_212154 (42638-42844)
               

               
               4-205, gnl|panTro1|chr1 (130317610-130317831)
               

               
               4-205, gnl|rheMac2|chr1 (130227140-130227361)
               

               
               4-205, gnl|rn3|chr2 (189351546-189351326)
               


               
               208-366, gnl|bosTau2|chr3 (15066088-15066246)
               

               
               208-366, gnl|Hg17|chr1 (148562146-148561988)
               

               
               208-366, gnl|Mm7|chr3 (94301806-94301964)

	4-122, - strand, RNAz p=0.59034
	20-128, - strand, RNAz p=0.938702

	4-205, gnl\|bosTau2\|chr3 (15064808-15065009)
	4-205, gnl\|canFam2\|chr17 (63876993-63877222)
	4-205, gnl\|dasNov1\|scaffold_3934 (54507-54739)
	4-205, gnl\|echTel1\|scaffold_175204 (4213-4445)
	4-205, gnl\|hg17\|chr1 (148564181-148564402)
	4-205, gnl\|Hg17\|chr1 (148564435-148564234)
	4-205, gnl\|mm7\|chr3 (94300115-94299895)
	4-205, gnl\|Mm7\|chr3 (94299860-94300061)
	4-205, gnl\|monDom2\|scaffold_44 (5070029-5070270)
	4-205, gnl\|oryCun1\|scaffold_212154 (42638-42844)
	4-205, gnl\|panTro1\|chr1 (130317610-130317831)
	4-205, gnl\|rheMac2\|chr1 (130227140-130227361)
	4-205, gnl\|rn3\|chr2 (189351546-189351326)

	208-366, gnl\|bosTau2\|chr3 (15066088-15066246)
	208-366, gnl\|Hg17\|chr1 (148562146-148561988)
	208-366, gnl\|Mm7\|chr3 (94301806-94301964)