Non-Coding RNA Search

Pig1-80D16

Sequence:


               
               AGGCACNGGCATCCANTACATATGGGGGGGTTCCTGGTGTGCCTCTGGCGCAAGGACACC
CAACTGGCCTTCAGCTACGGGACCGTCAACAAGCACCGGTCCCCTTTCCGGCACACCTTC
TGGGTGGGCTTCTTGCTGCTCTGGGCTTTCTCCTGTTTCTTCTTTGTCACCGCCAACATT
GTCCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGCACNGGCATCCANTACATATGGGGGGGTTCCTGGTGTGCCTCTGGCGCAAGGACACC
CAACTGGCCTTCAGCTACGGGACCGTCAACAAGCACCGGTCCCCTTTCCGGCACACCTTC
TGGGTGGGCTTCTTGCTGCTCTGGGCTTTCTCCTGTTTCTTCTTTGTCACCGCCAACATT
GTCCTC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               40-159, - strand, RNAz p=0.57962

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-159, - strand, RNAz p=0.57962

Aligned organism(s): 15 entry(ies)

More info

Aligned organism(s): 15 entry(ies)

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               2-186, gnl|bosTau2|chr19 (51843385-51843200)
               

               
               2-186, gnl|canFam2|chr9 (8600740-8600377)
               

               
               2-186, gnl|danRer3|chr3 (9686281-9686645)
               

               
               2-186, gnl|fr1|chrUn (261862402-261862060)
               

               
               2-186, gnl|galGal2|chr3_random (1190829-1191192)
               

               
               2-186, gnl|hg17|chr17 (70344074-70344441)
               

               
               2-186, gnl|Hg17|chr17 (70344218-70344403)
               

               
               2-186, gnl|mm7|chr11 (115352828-115353190)
               

               
               2-186, gnl|Mm7|chr11 (115352972-115353157)
               

               
               2-186, gnl|monDom2|scaffold_18 (31979540-31979896)
               

               
               2-186, gnl|panTro1|chr19 (73690232-73690599)
               

               
               2-186, gnl|rheMac2|chr16 (70110806-70111173)
               

               
               2-186, gnl|rn3|chr10 (105332003-105332365)
               

               
               2-186, gnl|tetNig1|chr3 (14171495-14171837)
               

               
               2-186, gnl|xenTro1|scaffold_485 (833905-834266)

Aligned organism(s): 15 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-186, gnl|bosTau2|chr19 (51843385-51843200)
               

               
               2-186, gnl|canFam2|chr9 (8600740-8600377)
               

               
               2-186, gnl|danRer3|chr3 (9686281-9686645)
               

               
               2-186, gnl|fr1|chrUn (261862402-261862060)
               

               
               2-186, gnl|galGal2|chr3_random (1190829-1191192)
               

               
               2-186, gnl|hg17|chr17 (70344074-70344441)
               

               
               2-186, gnl|Hg17|chr17 (70344218-70344403)
               

               
               2-186, gnl|mm7|chr11 (115352828-115353190)
               

               
               2-186, gnl|Mm7|chr11 (115352972-115353157)
               

               
               2-186, gnl|monDom2|scaffold_18 (31979540-31979896)
               

               
               2-186, gnl|panTro1|chr19 (73690232-73690599)
               

               
               2-186, gnl|rheMac2|chr16 (70110806-70111173)
               

               
               2-186, gnl|rn3|chr10 (105332003-105332365)
               

               
               2-186, gnl|tetNig1|chr3 (14171495-14171837)
               

               
               2-186, gnl|xenTro1|scaffold_485 (833905-834266)

	2-186, gnl\|bosTau2\|chr19 (51843385-51843200)
	2-186, gnl\|canFam2\|chr9 (8600740-8600377)
	2-186, gnl\|danRer3\|chr3 (9686281-9686645)
	2-186, gnl\|fr1\|chrUn (261862402-261862060)
	2-186, gnl\|galGal2\|chr3_random (1190829-1191192)
	2-186, gnl\|hg17\|chr17 (70344074-70344441)
	2-186, gnl\|Hg17\|chr17 (70344218-70344403)
	2-186, gnl\|mm7\|chr11 (115352828-115353190)
	2-186, gnl\|Mm7\|chr11 (115352972-115353157)
	2-186, gnl\|monDom2\|scaffold_18 (31979540-31979896)
	2-186, gnl\|panTro1\|chr19 (73690232-73690599)
	2-186, gnl\|rheMac2\|chr16 (70110806-70111173)
	2-186, gnl\|rn3\|chr10 (105332003-105332365)
	2-186, gnl\|tetNig1\|chr3 (14171495-14171837)
	2-186, gnl\|xenTro1\|scaffold_485 (833905-834266)