Non-Coding RNA Search

Pig1-80L10

Sequence:


               
               CCCACGCGTCCGGGGCGCTCGCGCGGCCAGGTGCTGGCTGTGATCGAATTTCTCAATCCT
CTGAGGCTTGAGCCTCCCACTTCACTCCCCTAGTCAGGCCTCCTGGCCCCCTTGTGCATC
CGTGGTGGCCTCTCTGCCCTCCCTGTTCTCCTGCCCTCCCCATGGCCCAGACATGAGCGG
TCCCCTANAAGGGGCTGATGGGGGAGGGGACCCTANGCCGGGAGAATCCTTCTGTCCTGG
AGGGGCTCCATCCCCTGGGCCTCCACAGCATCGACCTTGTCCCGGCCCCAGCCTGGCTGA
TGACACGGATGCCAACAGCAATGGCTCCAGTGGCAATGAGTCCAATGGACCCGAGTCCCG
GGGGGCATCACAGCGGAGCTCACATAGCTCCTCCTCGGGCAATGGCAAGGACTCGGCCCT
GCTGGAGACCACTGAGAGCAGCAAGAGCACAAACTCTCAGAGCCCATCCCCACCCAGCAG
TTCCATCGCTTACAGCCTCCTGAGTGCCAGCTCGGAGCAGGACAATCCATCTACCAGTGG
CTGCAGCAGTGAACAGTCAGCCCGGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCACGCGTCCGGGGCGCTCGCGCGGCCAGGTGCTGGCTGTGATCGAATTTCTCAATCCT
CTGAGGCTTGAGCCTCCCACTTCACTCCCCTAGTCAGGCCTCCTGGCCCCCTTGTGCATC
CGTGGTGGCCTCTCTGCCCTCCCTGTTCTCCTGCCCTCCCCATGGCCCAGACATGAGCGG
TCCCCTANAAGGGGCTGATGGGGGAGGGGACCCTANGCCGGGAGAATCCTTCTGTCCTGG
AGGGGCTCCATCCCCTGGGCCTCCACAGCATCGACCTTGTCCCGGCCCCAGCCTGGCTGA
TGACACGGATGCCAACAGCAATGGCTCCAGTGGCAATGAGTCCAATGGACCCGAGTCCCG
GGGGGCATCACAGCGGAGCTCACATAGCTCCTCCTCGGGCAATGGCAAGGACTCGGCCCT
GCTGGAGACCACTGAGAGCAGCAAGAGCACAAACTCTCAGAGCCCATCCCCACCCAGCAG
TTCCATCGCTTACAGCCTCCTGAGTGCCAGCTCGGAGCAGGACAATCCATCTACCAGTGG
CTGCAGCAGTGAACAGTCAGCCCGGGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9H2D0_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9H2D0_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               178-296, + strand, RNAz p=0.646457

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               178-296, + strand, RNAz p=0.646457

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               189-286, + strand, RNAmicro p=0.991738
               

               
               205-298, - strand, RNAmicro p=0.91893

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               189-286, + strand, RNAmicro p=0.991738
               

               
               205-298, - strand, RNAmicro p=0.91893

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               28-447, gnl|bosTau2|chr2 (77479763-77479335)
               

               
               28-447, gnl|Hg17|chr17 (7994891-7994475)
               

               
               28-447, gnl|Mm7|chr11 (69182076-69182490)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               28-447, gnl|bosTau2|chr2 (77479763-77479335)
               

               
               28-447, gnl|Hg17|chr17 (7994891-7994475)
               

               
               28-447, gnl|Mm7|chr11 (69182076-69182490)

	189-286, + strand, RNAmicro p=0.991738
	205-298, - strand, RNAmicro p=0.91893

	28-447, gnl\|bosTau2\|chr2 (77479763-77479335)
	28-447, gnl\|Hg17\|chr17 (7994891-7994475)
	28-447, gnl\|Mm7\|chr11 (69182076-69182490)