Non-Coding RNA Search

Pig1-82H22

Sequence:


               
               AGCATCTTCTTCCGCACAAGCCACAACCTGGCCGAACTCGAGGCCTACCTAGCTGCTCTC
ACCCAGCTCCGCGCTCTGGCCTACTATGCCCAGCGCCTGCTGGCCATCAACCGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCATCTTCTTCCGCACAAGCCACAACCTGGCCGAACTCGAGGCCTACCTAGCTGCTCTC
ACCCAGCTCCGCGCTCTGGCCTACTATGCCCAGCGCCTGCTGGCCATCAACCGG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-112, + strand, RNAz p=0.834894

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-112, + strand, RNAz p=0.834894

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               1-112, gnl|bosTau2|chr18 (45090618-45090507)
               

               
               1-112, gnl|canFam2|chr1 (114890365-114890070)
               

               
               1-112, gnl|danRer3|chr16 (22511273-22511554)
               

               
               1-112, gnl|dasNov1|scaffold_16277 (24036-23743)
               

               
               1-112, gnl|fr1|chrUn (71292184-71291905)
               

               
               1-112, gnl|hg17|chr19 (47606293-47606588)
               

               
               1-112, gnl|Hg17|chr19 (47606520-47606409)
               

               
               1-112, gnl|mm7|chr7 (22177919-22178214)
               

               
               1-112, gnl|Mm7|chr7 (22178146-22178035)
               

               
               1-112, gnl|monDom2|scaffold_573 (28339-28046)
               

               
               1-112, gnl|oryCun1|scaffold_147644 (586-881)
               

               
               1-112, gnl|panTro1|chr20 (44501717-44502012)
               

               
               1-112, gnl|rheMac2|chr19 (48734699-48734994)
               

               
               1-112, gnl|rn3|chr1 (80750385-80750680)
               

               
               1-112, gnl|tetNig1|chr8 (687238-687530)
               

               
               1-112, gnl|xenTro1|scaffold_187 (1298826-1298536)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-112, gnl|bosTau2|chr18 (45090618-45090507)
               

               
               1-112, gnl|canFam2|chr1 (114890365-114890070)
               

               
               1-112, gnl|danRer3|chr16 (22511273-22511554)
               

               
               1-112, gnl|dasNov1|scaffold_16277 (24036-23743)
               

               
               1-112, gnl|fr1|chrUn (71292184-71291905)
               

               
               1-112, gnl|hg17|chr19 (47606293-47606588)
               

               
               1-112, gnl|Hg17|chr19 (47606520-47606409)
               

               
               1-112, gnl|mm7|chr7 (22177919-22178214)
               

               
               1-112, gnl|Mm7|chr7 (22178146-22178035)
               

               
               1-112, gnl|monDom2|scaffold_573 (28339-28046)
               

               
               1-112, gnl|oryCun1|scaffold_147644 (586-881)
               

               
               1-112, gnl|panTro1|chr20 (44501717-44502012)
               

               
               1-112, gnl|rheMac2|chr19 (48734699-48734994)
               

               
               1-112, gnl|rn3|chr1 (80750385-80750680)
               

               
               1-112, gnl|tetNig1|chr8 (687238-687530)
               

               
               1-112, gnl|xenTro1|scaffold_187 (1298826-1298536)

	1-112, gnl\|bosTau2\|chr18 (45090618-45090507)
	1-112, gnl\|canFam2\|chr1 (114890365-114890070)
	1-112, gnl\|danRer3\|chr16 (22511273-22511554)
	1-112, gnl\|dasNov1\|scaffold_16277 (24036-23743)
	1-112, gnl\|fr1\|chrUn (71292184-71291905)
	1-112, gnl\|hg17\|chr19 (47606293-47606588)
	1-112, gnl\|Hg17\|chr19 (47606520-47606409)
	1-112, gnl\|mm7\|chr7 (22177919-22178214)
	1-112, gnl\|Mm7\|chr7 (22178146-22178035)
	1-112, gnl\|monDom2\|scaffold_573 (28339-28046)
	1-112, gnl\|oryCun1\|scaffold_147644 (586-881)
	1-112, gnl\|panTro1\|chr20 (44501717-44502012)
	1-112, gnl\|rheMac2\|chr19 (48734699-48734994)
	1-112, gnl\|rn3\|chr1 (80750385-80750680)
	1-112, gnl\|tetNig1\|chr8 (687238-687530)
	1-112, gnl\|xenTro1\|scaffold_187 (1298826-1298536)