Non-Coding RNA Search

Pig1-82H24

Sequence:


               
               CACTCTTGGCATCAGCCATTATTTTTTTCACCTATTGCTGAAAGGCTTCTGAAGTAAGCT
GATGTGGTTGAGCTACTGGGCATCTGAGAGCACTCGTGCTACACATTATTAAGTTGATTT
AAGGAAGCCTGTCAAGTTTTATTTACAGTGGGCCCAATTGGGCAGGAAGGAGAACAGACG
TTTTGGTGTGCTTCCAGCATCCCTCAGCATTTAATTCCATCTAATCTAACCTCGCAAACA
TTTGAAGGGTATAGGATTATAAATCCAGCGCAAGACTATCTGAGTAACTCGTTCAGTGGT
GAAATTTTCAGCATTGAGAGCAGGGTACTTACTGTTTTCAGTCTCTTCTCTGAACCATAA
GTAGTGCATTCTCTCAGATCTCAAACTCTGGGAGCAGCTGTTCTGGAGCATGTGTGTGTT
TTGCCAATATTGGCCAGAATTCAATTGATCTCATTCACCTGGACTCTTCTCTGGCCTGTC
CATCTTCCTAGAATCAGGAAGCAAAGTCACAAGATTATCTTTTGGACTGTGTATTCACTG
TGGCAGTTATTGCTTGTTCATAATGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACTCTTGGCATCAGCCATTATTTTTTTCACCTATTGCTGAAAGGCTTCTGAAGTAAGCT
GATGTGGTTGAGCTACTGGGCATCTGAGAGCACTCGTGCTACACATTATTAAGTTGATTT
AAGGAAGCCTGTCAAGTTTTATTTACAGTGGGCCCAATTGGGCAGGAAGGAGAACAGACG
TTTTGGTGTGCTTCCAGCATCCCTCAGCATTTAATTCCATCTAATCTAACCTCGCAAACA
TTTGAAGGGTATAGGATTATAAATCCAGCGCAAGACTATCTGAGTAACTCGTTCAGTGGT
GAAATTTTCAGCATTGAGAGCAGGGTACTTACTGTTTTCAGTCTCTTCTCTGAACCATAA
GTAGTGCATTCTCTCAGATCTCAAACTCTGGGAGCAGCTGTTCTGGAGCATGTGTGTGTT
TTGCCAATATTGGCCAGAATTCAATTGATCTCATTCACCTGGACTCTTCTCTGGCCTGTC
CATCTTCCTAGAATCAGGAAGCAAAGTCACAAGATTATCTTTTGGACTGTGTATTCACTG
TGGCAGTTATTGCTTGTTCATAATGA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               427-545, - strand, RNAz p=0.734169

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               427-545, - strand, RNAz p=0.734169

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

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               1-564, gnl|bosTau2|chr2 (30035679-30036241)
               

               
               1-564, gnl|canFam2|chr19 (56622386-56622817)
               

               
               1-564, gnl|dasNov1|scaffold_4092 (76362-76812)
               

               
               1-564, gnl|echTel1|scaffold_306646 (10592-10163)
               

               
               1-564, gnl|hg17|chr2 (153268268-153268708)
               

               
               1-564, gnl|Hg17|chr2 (153268293-153268866)
               

               
               1-564, gnl|loxAfr1|scaffold_1672 (92352-91905)
               

               
               1-564, gnl|mm7|chr2 (53087151-53087575)
               

               
               1-564, gnl|Mm7|chr2 (53087176-53087708)
               

               
               1-564, gnl|monDom2|scaffold_2 (43852127-43852579)
               

               
               1-564, gnl|panTro1|chr13 (42334042-42334482)
               

               
               1-564, gnl|rheMac2|chr12 (16237555-16237996)
               

               
               1-564, gnl|rn3|chr3 (34495107-34495521)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-564, gnl|bosTau2|chr2 (30035679-30036241)
               

               
               1-564, gnl|canFam2|chr19 (56622386-56622817)
               

               
               1-564, gnl|dasNov1|scaffold_4092 (76362-76812)
               

               
               1-564, gnl|echTel1|scaffold_306646 (10592-10163)
               

               
               1-564, gnl|hg17|chr2 (153268268-153268708)
               

               
               1-564, gnl|Hg17|chr2 (153268293-153268866)
               

               
               1-564, gnl|loxAfr1|scaffold_1672 (92352-91905)
               

               
               1-564, gnl|mm7|chr2 (53087151-53087575)
               

               
               1-564, gnl|Mm7|chr2 (53087176-53087708)
               

               
               1-564, gnl|monDom2|scaffold_2 (43852127-43852579)
               

               
               1-564, gnl|panTro1|chr13 (42334042-42334482)
               

               
               1-564, gnl|rheMac2|chr12 (16237555-16237996)
               

               
               1-564, gnl|rn3|chr3 (34495107-34495521)

	1-564, gnl\|bosTau2\|chr2 (30035679-30036241)
	1-564, gnl\|canFam2\|chr19 (56622386-56622817)
	1-564, gnl\|dasNov1\|scaffold_4092 (76362-76812)
	1-564, gnl\|echTel1\|scaffold_306646 (10592-10163)
	1-564, gnl\|hg17\|chr2 (153268268-153268708)
	1-564, gnl\|Hg17\|chr2 (153268293-153268866)
	1-564, gnl\|loxAfr1\|scaffold_1672 (92352-91905)
	1-564, gnl\|mm7\|chr2 (53087151-53087575)
	1-564, gnl\|Mm7\|chr2 (53087176-53087708)
	1-564, gnl\|monDom2\|scaffold_2 (43852127-43852579)
	1-564, gnl\|panTro1\|chr13 (42334042-42334482)
	1-564, gnl\|rheMac2\|chr12 (16237555-16237996)
	1-564, gnl\|rn3\|chr3 (34495107-34495521)