Non-Coding RNA Search

Pig1-83L09

Sequence:


               
               TTTTTAATTTATTAGTTTTGTTAATCAAAGTATAGCCATTGGTTTACAGTGTTGTGTTTC
TGGTGTGCAGCAAAGCGATCCAGTTTTATATACATATGTATATATGTTCTTTTTCACATT
TTCCATTATAGGTTCTTATAAGATATTGAATATAGTTCCCTGTGCTCTACAGAAGGACCT
CGTTGTTTGTAAATAGTAGTTGGTATCTGCTAATCCCAACCTCCTAATTTATCCTTCCCC
ACCCTCTTCCCCTTTGGTAACCCTAAGTTTGTTTTCTATGTCTGGGAGTCTGTGTCTGTG
TTATAAATACGTTCATTTGCATCATAttttagattccacatctaagtgatatcatatggt
atttgtcttggacttacttctcttagtatgataatctctaggtccatccatgttgctgca
aatggcattatttcattctttttatggctgagtagaattccattgtatgtatgtaccacg
tcttctttgtccattcgtctgtcAGTGGAGAAATGTCCTGATTCTTCAGTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTAATTTATTAGTTTTGTTAATCAAAGTATAGCCATTGGTTTACAGTGTTGTGTTTC
TGGTGTGCAGCAAAGCGATCCAGTTTTATATACATATGTATATATGTTCTTTTTCACATT
TTCCATTATAGGTTCTTATAAGATATTGAATATAGTTCCCTGTGCTCTACAGAAGGACCT
CGTTGTTTGTAAATAGTAGTTGGTATCTGCTAATCCCAACCTCCTAATTTATCCTTCCCC
ACCCTCTTCCCCTTTGGTAACCCTAAGTTTGTTTTCTATGTCTGGGAGTCTGTGTCTGTG
TTATAAATACGTTCATTTGCATCATAttttagattccacatctaagtgatatcatatggt
atttgtcttggacttacttctcttagtatgataatctctaggtccatccatgttgctgca
aatggcattatttcattctttttatggctgagtagaattccattgtatgtatgtaccacg
tcttctttgtccattcgtctgtcAGTGGAGAAATGTCCTGATTCTTCAGTTA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|26332577|dbj|BAC30006.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|26332577|dbj|BAC30006.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               38-166, - strand, RNAz p=0.982758
               

               
               283-397, - strand, RNAz p=0.963395

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               38-166, - strand, RNAz p=0.982758
               

               
               283-397, - strand, RNAz p=0.963395

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               2-528, gnl|bosTau2|chr5 (35208507-35207966)
               


               
               6-527, gnl|bosTau2|chr15 (7429844-7430388)
               


               
               38-526, gnl|bosTau2|chr12 (5801197-5800681)
               


               
               49-524, gnl|bosTau2|chr10 (19895538-19895059)
               


               
               50-502, gnl|bosTau2|chr10 (10720527-10721003)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-528, gnl|bosTau2|chr5 (35208507-35207966)
               


               
               6-527, gnl|bosTau2|chr15 (7429844-7430388)
               


               
               38-526, gnl|bosTau2|chr12 (5801197-5800681)
               


               
               49-524, gnl|bosTau2|chr10 (19895538-19895059)
               


               
               50-502, gnl|bosTau2|chr10 (10720527-10721003)

	38-166, - strand, RNAz p=0.982758
	283-397, - strand, RNAz p=0.963395

	2-528, gnl\|bosTau2\|chr5 (35208507-35207966)

	6-527, gnl\|bosTau2\|chr15 (7429844-7430388)

	38-526, gnl\|bosTau2\|chr12 (5801197-5800681)

	49-524, gnl\|bosTau2\|chr10 (19895538-19895059)

	50-502, gnl\|bosTau2\|chr10 (10720527-10721003)