Non-Coding RNA Search

Pig1-83O07

Sequence:


               
               CCCGGGAACAGTTTGGCAACAATCCCTTCTCTTCCCTGGCCGGGAACTCCGACAGCTCAT
CCTCCCAGCCTCTGCGGACTGAGAATCGAGAGCCCCTCCCTAACCCCTGGAGCCCCTCGC
CCCCCACCTCCCAGGCCCCCGGGTCCGGTGGGGAGGGCACCGGAGGATCGGGGACCAGCC
AGGTGCACCCGACAGTCTCGAACCCCTTTGGGATCAATGCGGCTAGCCTGGGGTCAGGGA
TGTTCAACAGCCCAGAAATGCAGGCCCTCCTCCAGCAGATCTCTGAGAACCCCCAGCTGA
TGCAGAACGTGATATCGGCCCCCTACATGCGCAGCATGATGCAGACACTTGCCCAGAACC
CTGACTTTGCTGCTCAGATGATGGTGAACGTGCCGCTTTTCGCGGGGAACCCCCAGCTGC
AGGAGCAGCTCCGCCTGCAGCTCCCGGTCTTCCTGCAGCAGATGCAGAACCCAGAGTCGC
TCTCCATTCTCACCAATCCCCGCGCCATGCAGGCGCTGCTGCAGATCCAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCGGGAACAGTTTGGCAACAATCCCTTCTCTTCCCTGGCCGGGAACTCCGACAGCTCAT
CCTCCCAGCCTCTGCGGACTGAGAATCGAGAGCCCCTCCCTAACCCCTGGAGCCCCTCGC
CCCCCACCTCCCAGGCCCCCGGGTCCGGTGGGGAGGGCACCGGAGGATCGGGGACCAGCC
AGGTGCACCCGACAGTCTCGAACCCCTTTGGGATCAATGCGGCTAGCCTGGGGTCAGGGA
TGTTCAACAGCCCAGAAATGCAGGCCCTCCTCCAGCAGATCTCTGAGAACCCCCAGCTGA
TGCAGAACGTGATATCGGCCCCCTACATGCGCAGCATGATGCAGACACTTGCCCAGAACC
CTGACTTTGCTGCTCAGATGATGGTGAACGTGCCGCTTTTCGCGGGGAACCCCCAGCTGC
AGGAGCAGCTCCGCCTGCAGCTCCCGGTCTTCCTGCAGCAGATGCAGAACCCAGAGTCGC
TCTCCATTCTCACCAATCCCCGCGCCATGCAGGCGCTGCTGCAGATCCAGC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61874046|ref|XP_605587.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61874046|ref|XP_605587.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               81-174, - strand, RNAz p=0.589028
               

               
               88-243, - strand, RNAz p=0.757367

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               81-174, - strand, RNAz p=0.589028
               

               
               88-243, - strand, RNAz p=0.757367

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               9-243, gnl|bosTau2|chr3 (10570082-10570316)
               

               
               9-243, gnl|canFam2|chr7 (44743826-44744036)
               

               
               9-243, gnl|dasNov1|scaffold_9673 (5022-5233)
               

               
               9-243, gnl|echTel1|scaffold_238755 (352-140)
               

               
               9-243, gnl|fr1|chrUn (115664897-115664636)
               

               
               9-243, gnl|Hg17|chr1 (152827090-152826856)
               

               
               9-243, gnl|hg17|chr2 (153559698-153559895)
               

               
               9-243, gnl|loxAfr1|scaffold_50392 (5006-5217)
               

               
               9-243, gnl|mm7|chr3 (88676922-88677132)
               

               
               9-243, gnl|Mm7|chr3 (88676906-88677140)
               

               
               9-243, gnl|monDom2|scaffold_59 (1513323-1513525)
               

               
               9-243, gnl|oryCun1|scaffold_191706 (3822-4022)
               

               
               9-243, gnl|panTro1|chr13 (42628766-42628963)
               

               
               9-243, gnl|rheMac2|chr12 (16507082-16507303)
               

               
               9-243, gnl|rn3|chr2 (180628525-180628707)
               

               
               9-243, gnl|tetNig1|chr21 (1450788-1451103)
               

               
               9-243, gnl|xenTro1|scaffold_433 (461603-461383)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-243, gnl|bosTau2|chr3 (10570082-10570316)
               

               
               9-243, gnl|canFam2|chr7 (44743826-44744036)
               

               
               9-243, gnl|dasNov1|scaffold_9673 (5022-5233)
               

               
               9-243, gnl|echTel1|scaffold_238755 (352-140)
               

               
               9-243, gnl|fr1|chrUn (115664897-115664636)
               

               
               9-243, gnl|Hg17|chr1 (152827090-152826856)
               

               
               9-243, gnl|hg17|chr2 (153559698-153559895)
               

               
               9-243, gnl|loxAfr1|scaffold_50392 (5006-5217)
               

               
               9-243, gnl|mm7|chr3 (88676922-88677132)
               

               
               9-243, gnl|Mm7|chr3 (88676906-88677140)
               

               
               9-243, gnl|monDom2|scaffold_59 (1513323-1513525)
               

               
               9-243, gnl|oryCun1|scaffold_191706 (3822-4022)
               

               
               9-243, gnl|panTro1|chr13 (42628766-42628963)
               

               
               9-243, gnl|rheMac2|chr12 (16507082-16507303)
               

               
               9-243, gnl|rn3|chr2 (180628525-180628707)
               

               
               9-243, gnl|tetNig1|chr21 (1450788-1451103)
               

               
               9-243, gnl|xenTro1|scaffold_433 (461603-461383)

	81-174, - strand, RNAz p=0.589028
	88-243, - strand, RNAz p=0.757367

	9-243, gnl\|bosTau2\|chr3 (10570082-10570316)
	9-243, gnl\|canFam2\|chr7 (44743826-44744036)
	9-243, gnl\|dasNov1\|scaffold_9673 (5022-5233)
	9-243, gnl\|echTel1\|scaffold_238755 (352-140)
	9-243, gnl\|fr1\|chrUn (115664897-115664636)
	9-243, gnl\|Hg17\|chr1 (152827090-152826856)
	9-243, gnl\|hg17\|chr2 (153559698-153559895)
	9-243, gnl\|loxAfr1\|scaffold_50392 (5006-5217)
	9-243, gnl\|mm7\|chr3 (88676922-88677132)
	9-243, gnl\|Mm7\|chr3 (88676906-88677140)
	9-243, gnl\|monDom2\|scaffold_59 (1513323-1513525)
	9-243, gnl\|oryCun1\|scaffold_191706 (3822-4022)
	9-243, gnl\|panTro1\|chr13 (42628766-42628963)
	9-243, gnl\|rheMac2\|chr12 (16507082-16507303)
	9-243, gnl\|rn3\|chr2 (180628525-180628707)
	9-243, gnl\|tetNig1\|chr21 (1450788-1451103)
	9-243, gnl\|xenTro1\|scaffold_433 (461603-461383)