Non-Coding RNA Search

Pig1-83O22

Sequence:


               
               GCGGCCTCCTACCCCCACGGGCAGCCCGCGATCCCCGGCTCCAGCGGGGTCCATCACCTG
AGCCCCCCTGGGGGCGGACCCTCCCCGGGGCGCCATGGCCCCCTCCCACCCCCGAGCTAC
AGCGCCCCACGTGCAACTGCAACAACAACAACGGCATGGGGGCCGCTCCCAAGCCCTTCC
TGGGGGGCTCTGGGCCCCCCATCAAGGCGGAGCCCAAGGCTCCCTATGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGCCTCCTACCCCCACGGGCAGCCCGCGATCCCCGGCTCCAGCGGGGTCCATCACCTG
AGCCCCCCTGGGGGCGGACCCTCCCCGGGGCGCCATGGCCCCCTCCCACCCCCGAGCTAC
AGCGCCCCACGTGCAACTGCAACAACAACAACGGCATGGGGGCCGCTCCCAAGCCCTTCC
TGGGGGGCTCTGGGCCCCCCATCAAGGCGGAGCCCAAGGCTCCCTATGCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               80-230, - strand, RNAz p=0.968349

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-230, - strand, RNAz p=0.968349

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               133-210, - strand, RNAmicro p=0.986013

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               133-210, - strand, RNAmicro p=0.986013

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-230, gnl|bosTau2|chr29 (31698717-31698944)
               

               
               1-230, gnl|Hg17|chr11 (61290037-61290264)
               

               
               1-230, gnl|Mm7|chr19 (9909010-9908783)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-230, gnl|bosTau2|chr29 (31698717-31698944)
               

               
               1-230, gnl|Hg17|chr11 (61290037-61290264)
               

               
               1-230, gnl|Mm7|chr19 (9909010-9908783)

	1-230, gnl\|bosTau2\|chr29 (31698717-31698944)
	1-230, gnl\|Hg17\|chr11 (61290037-61290264)
	1-230, gnl\|Mm7\|chr19 (9909010-9908783)