Pig1-85C08
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GGAGTGAGCAGCTGTTGGAGGCGGGCACCCAGCCCTCGTCGGGGGGTGCTGGCCTCATCC
TGACGCCCACCAGCCTTGGGCAACTGCCCACTTGACCCTTCCAAGGTTTCAGTGGACTGG
GTACTCAGGGCTGAGCCCGAGTCCCCTGGGCTGCCTCCAGGTGCTGGCTCCTCCCCAGTC
AGGCTCAGGTCTGAGAGACTTCCATCGTGCCAGGGCGCAGGTGATGCCCGGGGCTCCAGT
ACCCCCAAGGCCCCTATCATGTGGGCCACGCCAGCCTCCACAGTGGGCTGTGCCCCTCGG
GCACTACCCAGGCTACCACTCTTCACCAGACGCCCCTTAGGCGAGGCAGGGTCCCGCAGG
CTTCTCCCAGCCCAGGTAGTCTGGCGCTGAAGGGGGCGGGTAGGGGAGGGGCGCTCCAGA
TCGGGCTCTGTCTGGCAGCTGCCTGCCTCTTGTGCTGCTGTGTCCACCTCCTCCTGCTGC
TTCTGCTGCCGCCGCCGCTGCCACCGTTCTCTCAAGGGCTGGCGGAACTGAGCAGCCCCC |
Blue-coloured subsequences are predicted RNA structures by RNAz
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GGAGTGAGCAGCTGTTGGAGGCGGGCACCCAGCCCTCGTCGGGGGGTGCTGGCCTCATCC
TGACGCCCACCAGCCTTGGGCAACTGCCCACTTGACCCTTCCAAGGTTTCAGTGGACTGG
GTACTCAGGGCTGAGCCCGAGTCCCCTGGGCTGCCTCCAGGTGCTGGCTCCTCCCCAGTC
AGGCTCAGGTCTGAGAGACTTCCATCGTGCCAGGGCGCAGGTGATGCCCGGGGCTCCAGT
ACCCCCAAGGCCCCTATCATGTGGGCCACGCCAGCCTCCACAGTGGGCTGTGCCCCTCGG
GCACTACCCAGGCTACCACTCTTCACCAGACGCCCCTTAGGCGAGGCAGGGTCCCGCAGG
CTTCTCCCAGCCCAGGTAGTCTGGCGCTGAAGGGGGCGGGTAGGGGAGGGGCGCTCCAGA
TCGGGCTCTGTCTGGCAGCTGCCTGCCTCTTGTGCTGCTGTGTCCACCTCCTCCTGCTGC
TTCTGCTGCCGCCGCCGCTGCCACCGTTCTCTCAAGGGCTGGCGGAACTGAGCAGCCCCC |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
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71-133, + strand, RNAmicro p=0.980495 |
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301-412, + strand, RNAmicro p=0.940241 |
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66-138, - strand, RNAmicro p=0.930405 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
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71-133, + strand, RNAmicro p=0.980495 |
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301-412, + strand, RNAmicro p=0.940241 |
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66-138, - strand, RNAmicro p=0.930405 |
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1-197, 497395 MARC 2BOV Bos taurus cDNA 5', mRNA sequence (gb|BM031842.1|),
blast E-value=0, identity=92.39% |
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1-197, 001001BPMA005649HT BPMA Bos taurus cDNA, mRNA sequence (gb|DY061453.1|),
blast E-value=0, identity=91.88% |
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1-197, 001002BPMA006025HT BPMA Bos taurus cDNA, mRNA sequence (gb|DY069368.1|),
blast E-value=0, identity=91.88% |
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1-197, 001003BPMA011202HT BPMA Bos taurus cDNA, mRNA sequence (gb|DY099080.1|),
blast E-value=0, identity=91.88% |
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1-197, 001002BPMA006029HT BPMA Bos taurus cDNA, mRNA sequence (gb|DY130621.1|),
blast E-value=0, identity=91.37% |
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1-197, 001002BPMA006035HT BPMA Bos taurus cDNA, mRNA sequence (gb|DY134998.1|),
blast E-value=0, identity=91.88% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
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1-197, 497395 MARC 2BOV Bos taurus cDNA 5', mRNA sequence (gb|BM031842.1|),
blast E-value=0, identity=92.39% |
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1-197, 001001BPMA005649HT BPMA Bos taurus cDNA, mRNA sequence (gb|DY061453.1|),
blast E-value=0, identity=91.88% |
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1-197, 001002BPMA006025HT BPMA Bos taurus cDNA, mRNA sequence (gb|DY069368.1|),
blast E-value=0, identity=91.88% |
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1-197, 001003BPMA011202HT BPMA Bos taurus cDNA, mRNA sequence (gb|DY099080.1|),
blast E-value=0, identity=91.88% |
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1-197, 001002BPMA006029HT BPMA Bos taurus cDNA, mRNA sequence (gb|DY130621.1|),
blast E-value=0, identity=91.37% |
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1-197, 001002BPMA006035HT BPMA Bos taurus cDNA, mRNA sequence (gb|DY134998.1|),
blast E-value=0, identity=91.88% |
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1-259, gnl|bosTau2|chr3 (8117851-8118109) |
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1-259, gnl|Hg17|chr1 (150719162-150719420) |
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1-259, gnl|Mm7|chr3 (90407873-90407615) |
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260-430, gnl|bosTau2|chr3 (8118340-8118510) |
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260-430, gnl|canFam2|chr7 (46169184-46169018) |
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260-430, gnl|dasNov1|scaffold_5017 (59337-59505) |
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260-430, gnl|echTel1|scaffold_286841 (52017-52185) |
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260-430, gnl|hg17|chr1 (150719669-150719837) |
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260-430, gnl|Hg17|chr1 (150719684-150719854) |
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260-430, gnl|loxAfr1|scaffold_47637 (9240-9072) |
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260-430, gnl|mm7|chr3 (90407142-90406974) |
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260-430, gnl|Mm7|chr3 (90407125-90406955) |
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260-430, gnl|monDom2|scaffold_59 (4148069-4147903) |
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260-430, gnl|oryCun1|scaffold_198987 (73236-73068) |
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260-430, gnl|panTro1|chr1 (132700530-132700698) |
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260-430, gnl|rheMac2|chr1 (132450365-132450533) |
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260-430, gnl|rn3|chr2 (182469094-182468926) |
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260-430, gnl|tetNig1|chrUn_random (47022112-47021947) |
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260-430, gnl|xenTro1|scaffold_1238 (187184-187037) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
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1-259, gnl|bosTau2|chr3 (8117851-8118109) |
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1-259, gnl|Hg17|chr1 (150719162-150719420) |
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1-259, gnl|Mm7|chr3 (90407873-90407615) |
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260-430, gnl|bosTau2|chr3 (8118340-8118510) |
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260-430, gnl|canFam2|chr7 (46169184-46169018) |
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260-430, gnl|dasNov1|scaffold_5017 (59337-59505) |
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260-430, gnl|echTel1|scaffold_286841 (52017-52185) |
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260-430, gnl|hg17|chr1 (150719669-150719837) |
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260-430, gnl|Hg17|chr1 (150719684-150719854) |
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260-430, gnl|loxAfr1|scaffold_47637 (9240-9072) |
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260-430, gnl|mm7|chr3 (90407142-90406974) |
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260-430, gnl|Mm7|chr3 (90407125-90406955) |
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260-430, gnl|monDom2|scaffold_59 (4148069-4147903) |
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260-430, gnl|oryCun1|scaffold_198987 (73236-73068) |
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260-430, gnl|panTro1|chr1 (132700530-132700698) |
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260-430, gnl|rheMac2|chr1 (132450365-132450533) |
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260-430, gnl|rn3|chr2 (182469094-182468926) |
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260-430, gnl|tetNig1|chrUn_random (47022112-47021947) |
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260-430, gnl|xenTro1|scaffold_1238 (187184-187037) |