Non-Coding RNA Search

Pig1-85M10

Sequence:


               
               GGAGGACTAATGTGGGGTGTGGCTTAATTAAAACATTCCCCCATCCCCCTCCACGTTTTA
TGTTTCCATGGACATTGGCCTCCATTTACCTCCAACGAGCCTGTGAATGACCTTGATCCC
AGTAGCTCTTGCTGATTTCAGCTCCCAGGTAATAAGTCTGGGAATATTTTCTCAGCTCAG
TCAGGAGGGGAAGGGGGTCTTCTGCAGTTGCTTTCTGATACATTTACTTTCTACCTGTTG
GCTTCAAACAGTATTAATTTTTATGTGCTCGTTGTGCACTGTGTTTAATTAAAAGCAGTT
CTATTCGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGGACTAATGTGGGGTGTGGCTTAATTAAAACATTCCCCCATCCCCCTCCACGTTTTA
TGTTTCCATGGACATTGGCCTCCATTTACCTCCAACGAGCCTGTGAATGACCTTGATCCC
AGTAGCTCTTGCTGATTTCAGCTCCCAGGTAATAAGTCTGGGAATATTTTCTCAGCTCAG
TCAGGAGGGGAAGGGGGTCTTCTGCAGTTGCTTTCTGATACATTTACTTTCTACCTGTTG
GCTTCAAACAGTATTAATTTTTATGTGCTCGTTGTGCACTGTGTTTAATTAAAAGCAGTT
CTATTCGC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               148-237, + strand, RNAz p=0.958167

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               148-237, + strand, RNAz p=0.958167

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               38-308, gnl|bosTau2|chr2 (60002931-60003205)
               

               
               38-308, gnl|canFam2|chr13 (20468583-20468850)
               

               
               38-308, gnl|echTel1|scaffold_313686 (49288-49549)
               

               
               38-308, gnl|galGal2|chr2 (133231718-133231486)
               

               
               38-308, gnl|hg17|chr8 (119169382-119169639)
               

               
               38-308, gnl|Hg17|chr8 (119169664-119169397)
               

               
               38-308, gnl|loxAfr1|scaffold_30206 (7200-6940)
               

               
               38-308, gnl|mm7|chr15 (53383057-53383314)
               

               
               38-308, gnl|Mm7|chr15 (53383335-53383071)
               

               
               38-308, gnl|monDom2|scaffold_3 (38353158-38352887)
               

               
               38-308, gnl|oryCun1|scaffold_200661 (73169-72915)
               

               
               38-308, gnl|panTro1|chr7 (121899006-121899263)
               

               
               38-308, gnl|rheMac2|chr8 (120642692-120642947)
               

               
               38-308, gnl|rn3|chr7 (89670292-89670546)

Aligned organism(s): 14 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               38-308, gnl|bosTau2|chr2 (60002931-60003205)
               

               
               38-308, gnl|canFam2|chr13 (20468583-20468850)
               

               
               38-308, gnl|echTel1|scaffold_313686 (49288-49549)
               

               
               38-308, gnl|galGal2|chr2 (133231718-133231486)
               

               
               38-308, gnl|hg17|chr8 (119169382-119169639)
               

               
               38-308, gnl|Hg17|chr8 (119169664-119169397)
               

               
               38-308, gnl|loxAfr1|scaffold_30206 (7200-6940)
               

               
               38-308, gnl|mm7|chr15 (53383057-53383314)
               

               
               38-308, gnl|Mm7|chr15 (53383335-53383071)
               

               
               38-308, gnl|monDom2|scaffold_3 (38353158-38352887)
               

               
               38-308, gnl|oryCun1|scaffold_200661 (73169-72915)
               

               
               38-308, gnl|panTro1|chr7 (121899006-121899263)
               

               
               38-308, gnl|rheMac2|chr8 (120642692-120642947)
               

               
               38-308, gnl|rn3|chr7 (89670292-89670546)

	38-308, gnl\|bosTau2\|chr2 (60002931-60003205)
	38-308, gnl\|canFam2\|chr13 (20468583-20468850)
	38-308, gnl\|echTel1\|scaffold_313686 (49288-49549)
	38-308, gnl\|galGal2\|chr2 (133231718-133231486)
	38-308, gnl\|hg17\|chr8 (119169382-119169639)
	38-308, gnl\|Hg17\|chr8 (119169664-119169397)
	38-308, gnl\|loxAfr1\|scaffold_30206 (7200-6940)
	38-308, gnl\|mm7\|chr15 (53383057-53383314)
	38-308, gnl\|Mm7\|chr15 (53383335-53383071)
	38-308, gnl\|monDom2\|scaffold_3 (38353158-38352887)
	38-308, gnl\|oryCun1\|scaffold_200661 (73169-72915)
	38-308, gnl\|panTro1\|chr7 (121899006-121899263)
	38-308, gnl\|rheMac2\|chr8 (120642692-120642947)
	38-308, gnl\|rn3\|chr7 (89670292-89670546)