Pig1-87C18
|
GCAGTTCGCTGTGACTCGTTTCTCTCCTCCCATCCCACATTTCTCTTGGCTGGACTCTAC
CCTCTCAGCTCGTTCTGGTCATCCTGGACATTCCCTCTGTTTTTTTCCCAAGAGTGCGGC
GGCTGCGGGCGCCGAGTCCCAGACGGCACCGACGCCAAAAGCGTCGTTTCCTCTCATCTA
CCAGGTTCTCACAGCCCGGCCCGAACATGCTGGACGGCTTGAAGATGGAGGAGAACTTCC
AAAGTGCCATCGAGACGTCGGCCTCTTTTTCCTCGCTGCTGGGCAGAGCTGTGAGCCCCA
AGTCTGTCTGCGAGGGCTGTCAACGGGTCATCTCGGACAGGTTTCTGCTGCGGCTCAACG
ACAGCTTCTGGCATGAGCAGTGCGTTCAGTGTGCCTCCTGCAAAGAGCCCCTGGAGACCA
CCTGCTTCTACCGGGACAAGAAGCTCTACTGCAAGTATGACTATGAGAAGCTGTTTGCTG
TCAAATGTGGGGGCTGCTTT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
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GCAGTTCGCTGTGACTCGTTTCTCTCCTCCCATCCCACATTTCTCTTGGCTGGACTCTAC
CCTCTCAGCTCGTTCTGGTCATCCTGGACATTCCCTCTGTTTTTTTCCCAAGAGTGCGGC
GGCTGCGGGCGCCGAGTCCCAGACGGCACCGACGCCAAAAGCGTCGTTTCCTCTCATCTA
CCAGGTTCTCACAGCCCGGCCCGAACATGCTGGACGGCTTGAAGATGGAGGAGAACTTCC
AAAGTGCCATCGAGACGTCGGCCTCTTTTTCCTCGCTGCTGGGCAGAGCTGTGAGCCCCA
AGTCTGTCTGCGAGGGCTGTCAACGGGTCATCTCGGACAGGTTTCTGCTGCGGCTCAACG
ACAGCTTCTGGCATGAGCAGTGCGTTCAGTGTGCCTCCTGCAAAGAGCCCCTGGAGACCA
CCTGCTTCTACCGGGACAAGAAGCTCTACTGCAAGTATGACTATGAGAAGCTGTTTGCTG
TCAAATGTGGGGGCTGCTTT
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
169-236, + strand, RNAmicro p=0.979876 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
169-236, + strand, RNAmicro p=0.979876 |
|
1-283, gnl|bosTau2|chr3 (4602898-4603179) |
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1-283, gnl|canFam2|chr38 (20958302-20958097) |
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1-283, gnl|dasNov1|scaffold_222 (11392-11189) |
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1-283, gnl|echTel1|scaffold_238215 (624-828) |
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1-283, gnl|galGal2|chr8 (5195075-5194890) |
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1-283, gnl|hg17|chr1 (162056350-162056554) |
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1-283, gnl|Hg17|chr1 (162056655-162056378) |
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1-283, gnl|loxAfr1|scaffold_5138 (44168-43964) |
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1-283, gnl|mm7|chr1 (167668239-167668034) |
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1-283, gnl|Mm7|chr1 (167667928-167668209) |
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1-283, gnl|monDom2|scaffold_16 (15613184-15613458) |
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1-283, gnl|oryCun1|scaffold_215205 (269144-268940) |
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1-283, gnl|panTro1|chr1 (144301253-144301457) |
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1-283, gnl|rheMac2|chr1 (195191409-195191613) |
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1-283, gnl|rn3|chr13 (83369031-83368827) |
|
1-283, gnl|xenTro1|scaffold_317 (528431-528585) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-283, gnl|bosTau2|chr3 (4602898-4603179) |
|
1-283, gnl|canFam2|chr38 (20958302-20958097) |
|
1-283, gnl|dasNov1|scaffold_222 (11392-11189) |
|
1-283, gnl|echTel1|scaffold_238215 (624-828) |
|
1-283, gnl|galGal2|chr8 (5195075-5194890) |
|
1-283, gnl|hg17|chr1 (162056350-162056554) |
|
1-283, gnl|Hg17|chr1 (162056655-162056378) |
|
1-283, gnl|loxAfr1|scaffold_5138 (44168-43964) |
|
1-283, gnl|mm7|chr1 (167668239-167668034) |
|
1-283, gnl|Mm7|chr1 (167667928-167668209) |
|
1-283, gnl|monDom2|scaffold_16 (15613184-15613458) |
|
1-283, gnl|oryCun1|scaffold_215205 (269144-268940) |
|
1-283, gnl|panTro1|chr1 (144301253-144301457) |
|
1-283, gnl|rheMac2|chr1 (195191409-195191613) |
|
1-283, gnl|rn3|chr13 (83369031-83368827) |
|
1-283, gnl|xenTro1|scaffold_317 (528431-528585) |
