Non-Coding RNA Search

Pig1-88G16

Sequence:


               
               CAGGGCACTGGGGGCAAATGCTCTGAGCACCCAGACCTGCCCCTGTTTCAGGGGAATGTG
TCCATTTGCCAAATCCTAGTCCCATGATCTGTCCCCAAAGGGGAACAAAGGGACTTCTGA
CAGCTCAGATTAGCCCCAGTTCCTACACACCTCCAGGGAAAAGGGCGTCTGGTCTCACTG
GTACTGTGAAAATGCCCGGCCAGGGCCTGGGTGTGGGAACATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGGGCACTGGGGGCAAATGCTCTGAGCACCCAGACCTGCCCCTGTTTCAGGGGAATGTG
TCCATTTGCCAAATCCTAGTCCCATGATCTGTCCCCAAAGGGGAACAAAGGGACTTCTGA
CAGCTCAGATTAGCCCCAGTTCCTACACACCTCCAGGGAAAAGGGCGTCTGGTCTCACTG
GTACTGTGAAAATGCCCGGCCAGGGCCTGGGTGTGGGAACATC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-193, + strand, RNAz p=0.982738
               

               
               64-197, - strand, RNAz p=0.981574

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-193, + strand, RNAz p=0.982738
               

               
               64-197, - strand, RNAz p=0.981574

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_020983, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_020983, +

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               1-197, gnl|bosTau2|chr5 (26328337-26328533)
               

               
               1-197, gnl|canFam2|chr27 (8763139-8762844)
               

               
               1-197, gnl|dasNov1|scaffold_227433 (187-482)
               

               
               1-197, gnl|echTel1|scaffold_325175 (95580-95300)
               

               
               1-197, gnl|hg17|chr12 (47447820-47448105)
               

               
               1-197, gnl|Hg17|chr12 (47448100-47447903)
               

               
               1-197, gnl|mm7|chr15 (98577859-98578166)
               

               
               1-197, gnl|Mm7|chr15 (98578161-98577962)
               

               
               1-197, gnl|panTro1|chr10 (48542140-48542425)
               

               
               1-197, gnl|rheMac2|chr11 (45888721-45889005)
               

               
               1-197, gnl|rn3|chr7 (137417908-137418201)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-197, gnl|bosTau2|chr5 (26328337-26328533)
               

               
               1-197, gnl|canFam2|chr27 (8763139-8762844)
               

               
               1-197, gnl|dasNov1|scaffold_227433 (187-482)
               

               
               1-197, gnl|echTel1|scaffold_325175 (95580-95300)
               

               
               1-197, gnl|hg17|chr12 (47447820-47448105)
               

               
               1-197, gnl|Hg17|chr12 (47448100-47447903)
               

               
               1-197, gnl|mm7|chr15 (98577859-98578166)
               

               
               1-197, gnl|Mm7|chr15 (98578161-98577962)
               

               
               1-197, gnl|panTro1|chr10 (48542140-48542425)
               

               
               1-197, gnl|rheMac2|chr11 (45888721-45889005)
               

               
               1-197, gnl|rn3|chr7 (137417908-137418201)

	1-193, + strand, RNAz p=0.982738
	64-197, - strand, RNAz p=0.981574

	1-197, gnl\|bosTau2\|chr5 (26328337-26328533)
	1-197, gnl\|canFam2\|chr27 (8763139-8762844)
	1-197, gnl\|dasNov1\|scaffold_227433 (187-482)
	1-197, gnl\|echTel1\|scaffold_325175 (95580-95300)
	1-197, gnl\|hg17\|chr12 (47447820-47448105)
	1-197, gnl\|Hg17\|chr12 (47448100-47447903)
	1-197, gnl\|mm7\|chr15 (98577859-98578166)
	1-197, gnl\|Mm7\|chr15 (98578161-98577962)
	1-197, gnl\|panTro1\|chr10 (48542140-48542425)
	1-197, gnl\|rheMac2\|chr11 (45888721-45889005)
	1-197, gnl\|rn3\|chr7 (137417908-137418201)