Pig1-88H18
|
GGAACTATTAAGACTACCAAGGTTCTCGATAGAGAAGAAACTCCATGGTACAACATCACA
GTTCCAGTATTGGCATCAATGTTGAAAAATCTGTCATCTTCAGCATTATAGTCGATAAAA
TATCTTACTAAGCTATTGGCACTGTCCGGATCTTGTGCCAAAACTGTGCCGACGACAGTC
CCAATCTTAGCGTTTTCATACACTTCCATGACATAGGAAGGCATGGAAAATAGTGGTGGT
TCATCCACATCCCCAACAATAATGCTGAAGATGACA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GGAACTATTAAGACTACCAAGGTTCTCGATAGAGAAGAAACTCCATGGTACAACATCACA
GTTCCAGTATTGGCATCAATGTTGAAAAATCTGTCATCTTCAGCATTATAGTCGATAAAA
TATCTTACTAAGCTATTGGCACTGTCCGGATCTTGTGCCAAAACTGTGCCGACGACAGTC
CCAATCTTAGCGTTTTCATACACTTCCATGACATAGGAAGGCATGGAAAATAGTGGTGGT
TCATCCACATCCCCAACAATAATGCTGAAGATGACA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
121-260, CJ467078 macaque brain cDNA library QnpA Macaca fascicularis cDNA
(dbj|CJ467078.1|), blast E-value=5.99994e-41, identity=90.71% |
|
121-260, CJ475856 macaque brain cDNA library QorA Macaca fascicularis cDNA
(dbj|CJ475856.1|), blast E-value=3e-36, identity=89.29% |
|
121-258, 601140874F1 NIH_MGC_9 Homo sapiens cDNA clone IMAGE (gb|BE315484.1|),
blast E-value=2e-37, identity=89.86% |
|
121-254, 601461041F1 NIH_MGC_66 Homo sapiens cDNA clone IMAGE (gb|BF037458.1|),
blast E-value=1e-20, identity=86.57% |
|
121-260, 602298473F1 NIH_MGC_87 Homo sapiens cDNA clone IMAGE (gb|BG032808.1|),
blast E-value=1e-38, identity=90% |
|
121-260, LB02627.CR_I17 GC_BGC-26 Bos taurus cDNA clone IMAGE (gb|DV883501.1|),
blast E-value=0, identity=92.86% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
|
121-260, CJ467078 macaque brain cDNA library QnpA Macaca fascicularis cDNA
(dbj|CJ467078.1|), blast E-value=5.99994e-41, identity=90.71% |
|
121-260, CJ475856 macaque brain cDNA library QorA Macaca fascicularis cDNA
(dbj|CJ475856.1|), blast E-value=3e-36, identity=89.29% |
|
121-258, 601140874F1 NIH_MGC_9 Homo sapiens cDNA clone IMAGE (gb|BE315484.1|),
blast E-value=2e-37, identity=89.86% |
|
121-254, 601461041F1 NIH_MGC_66 Homo sapiens cDNA clone IMAGE (gb|BF037458.1|),
blast E-value=1e-20, identity=86.57% |
|
121-260, 602298473F1 NIH_MGC_87 Homo sapiens cDNA clone IMAGE (gb|BG032808.1|),
blast E-value=1e-38, identity=90% |
|
121-260, LB02627.CR_I17 GC_BGC-26 Bos taurus cDNA clone IMAGE (gb|DV883501.1|),
blast E-value=0, identity=92.86% |
|
115-263, gnl|bosTau2|chr20 (31918241-31918389) |
|
115-263, gnl|canFam2|chr4 (88005486-88005180) |
|
115-263, gnl|danRer3|chr2 (20204692-20204409) |
|
115-263, gnl|dasNov1|scaffold_25002 (3985-3693) |
|
115-263, gnl|echTel1|scaffold_225547 (21817-22094) |
|
115-263, gnl|fr1|chrUn (9506215-9505932) |
|
115-263, gnl|galGal2|chr2 (74165233-74164939) |
|
115-263, gnl|hg17|chr5 (19607426-19607722) |
|
115-263, gnl|Hg17|chr5 (19607436-19607584) |
|
115-263, gnl|loxAfr1|scaffold_17206 (36586-36878) |
|
115-263, gnl|mm7|chr15 (23498728-23498439) |
|
115-263, gnl|Mm7|chr15 (23498715-23498567) |
|
115-263, gnl|monDom2|scaffold_4 (43092578-43092881) |
|
115-263, gnl|oryCun1|scaffold_159180 (9680-9392) |
|
115-263, gnl|panTro1|chr4 (100677965-100677669) |
|
115-263, gnl|rheMac2|chr6 (19626842-19627130) |
|
115-263, gnl|rn3|chr2 (74643868-74643579) |
|
115-263, gnl|tetNig1|chr1 (13770871-13770593) |
|
115-263, gnl|xenTro1|scaffold_438 (767283-766991) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
115-263, gnl|bosTau2|chr20 (31918241-31918389) |
|
115-263, gnl|canFam2|chr4 (88005486-88005180) |
|
115-263, gnl|danRer3|chr2 (20204692-20204409) |
|
115-263, gnl|dasNov1|scaffold_25002 (3985-3693) |
|
115-263, gnl|echTel1|scaffold_225547 (21817-22094) |
|
115-263, gnl|fr1|chrUn (9506215-9505932) |
|
115-263, gnl|galGal2|chr2 (74165233-74164939) |
|
115-263, gnl|hg17|chr5 (19607426-19607722) |
|
115-263, gnl|Hg17|chr5 (19607436-19607584) |
|
115-263, gnl|loxAfr1|scaffold_17206 (36586-36878) |
|
115-263, gnl|mm7|chr15 (23498728-23498439) |
|
115-263, gnl|Mm7|chr15 (23498715-23498567) |
|
115-263, gnl|monDom2|scaffold_4 (43092578-43092881) |
|
115-263, gnl|oryCun1|scaffold_159180 (9680-9392) |
|
115-263, gnl|panTro1|chr4 (100677965-100677669) |
|
115-263, gnl|rheMac2|chr6 (19626842-19627130) |
|
115-263, gnl|rn3|chr2 (74643868-74643579) |
|
115-263, gnl|tetNig1|chr1 (13770871-13770593) |
|
115-263, gnl|xenTro1|scaffold_438 (767283-766991) |
