Non-Coding RNA Search

Pig1-89B01

Sequence:


               
               GGTAAAAATGGGTAGAAAGAGCGTGCCTGGCACCAGCAGGAACTGGATAAGGCTCTGAAG
AGCCTTGAGAGGGAGAAAACGGAGCTGGAAATGAGGCTGAGGGAGCAGCAGGCAGAAACA
GAGGCCATGCGGACGCAGAGGGAAGAAGAACGGGCTGAGGCTGAGAGCACCCTGCGCCAG
ATGCAGCTCGAAACAGAGAAGGAGAGAATGTCCCTCCTGGAGACACTGCTGCAGACCCAG
AAGGAGCTGGCAGATGCCAGCCAACAACTGGAGCGGCTGAGGCAGGACATGAAGGTTCAG
AAGTTAAAGGAGCAGGAGACCACTGGGATGCTGCAGACCCAGCTCCGGGAAGCTCAGAAG
GAGCTGGAACAGGCAGCCCAGCAGCACAGAGACAGCCTTGCTGCCCTCCAAGAAGAAGGC
CGTGCCCTGCTGCAGGATAAGATAGACCTGCACAAGCAGGTGGAGGACTTGAAGTCTCAG
CTGGTTTCCAAGGAAGACTCCCAAAGGCTGGTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTAAAAATGGGTAGAAAGAGCGTGCCTGGCACCAGCAGGAACTGGATAAGGCTCTGAAG
AGCCTTGAGAGGGAGAAAACGGAGCTGGAAATGAGGCTGAGGGAGCAGCAGGCAGAAACA
GAGGCCATGCGGACGCAGAGGGAAGAAGAACGGGCTGAGGCTGAGAGCACCCTGCGCCAG
ATGCAGCTCGAAACAGAGAAGGAGAGAATGTCCCTCCTGGAGACACTGCTGCAGACCCAG
AAGGAGCTGGCAGATGCCAGCCAACAACTGGAGCGGCTGAGGCAGGACATGAAGGTTCAG
AAGTTAAAGGAGCAGGAGACCACTGGGATGCTGCAGACCCAGCTCCGGGAAGCTCAGAAG
GAGCTGGAACAGGCAGCCCAGCAGCACAGAGACAGCCTTGCTGCCCTCCAAGAAGAAGGC
CGTGCCCTGCTGCAGGATAAGATAGACCTGCACAAGCAGGTGGAGGACTTGAAGTCTCAG
CTGGTTTCCAAGGAAGACTCCCAAAGGCTGGTA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               179-316, - strand, RNAz p=0.96067

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               179-316, - strand, RNAz p=0.96067

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               179-316, gnl|bosTau2|chr13 (45711588-45711725)
               

               
               179-316, gnl|canFam2|chr24 (27414054-27414253)
               

               
               179-316, gnl|dasNov1|scaffold_174012 (3516-3713)
               

               
               179-316, gnl|galGal2|chr20 (1110513-1110317)
               

               
               179-316, gnl|hg17|chr20 (33542415-33542616)
               

               
               179-316, gnl|Hg17|chr20 (33542450-33542587)
               

               
               179-316, gnl|loxAfr1|scaffold_5221 (36161-36361)
               

               
               179-316, gnl|mm7|chr2 (155720532-155720711)
               

               
               179-316, gnl|Mm7|chr2 (155720568-155720705)
               

               
               179-316, gnl|monDom2|scaffold_6 (11491636-11491445)
               

               
               179-316, gnl|oryCun1|scaffold_65473 (2170-1973)
               

               
               179-316, gnl|panTro1|chr21 (35562305-35562506)
               

               
               179-316, gnl|rheMac2|chr10 (29051100-29050899)
               

               
               179-316, gnl|rn3|chr3 (146293662-146293841)

Aligned organism(s): 14 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               179-316, gnl|bosTau2|chr13 (45711588-45711725)
               

               
               179-316, gnl|canFam2|chr24 (27414054-27414253)
               

               
               179-316, gnl|dasNov1|scaffold_174012 (3516-3713)
               

               
               179-316, gnl|galGal2|chr20 (1110513-1110317)
               

               
               179-316, gnl|hg17|chr20 (33542415-33542616)
               

               
               179-316, gnl|Hg17|chr20 (33542450-33542587)
               

               
               179-316, gnl|loxAfr1|scaffold_5221 (36161-36361)
               

               
               179-316, gnl|mm7|chr2 (155720532-155720711)
               

               
               179-316, gnl|Mm7|chr2 (155720568-155720705)
               

               
               179-316, gnl|monDom2|scaffold_6 (11491636-11491445)
               

               
               179-316, gnl|oryCun1|scaffold_65473 (2170-1973)
               

               
               179-316, gnl|panTro1|chr21 (35562305-35562506)
               

               
               179-316, gnl|rheMac2|chr10 (29051100-29050899)
               

               
               179-316, gnl|rn3|chr3 (146293662-146293841)

	179-316, gnl\|bosTau2\|chr13 (45711588-45711725)
	179-316, gnl\|canFam2\|chr24 (27414054-27414253)
	179-316, gnl\|dasNov1\|scaffold_174012 (3516-3713)
	179-316, gnl\|galGal2\|chr20 (1110513-1110317)
	179-316, gnl\|hg17\|chr20 (33542415-33542616)
	179-316, gnl\|Hg17\|chr20 (33542450-33542587)
	179-316, gnl\|loxAfr1\|scaffold_5221 (36161-36361)
	179-316, gnl\|mm7\|chr2 (155720532-155720711)
	179-316, gnl\|Mm7\|chr2 (155720568-155720705)
	179-316, gnl\|monDom2\|scaffold_6 (11491636-11491445)
	179-316, gnl\|oryCun1\|scaffold_65473 (2170-1973)
	179-316, gnl\|panTro1\|chr21 (35562305-35562506)
	179-316, gnl\|rheMac2\|chr10 (29051100-29050899)
	179-316, gnl\|rn3\|chr3 (146293662-146293841)