Non-Coding RNA Search

Pig1-89C14

Sequence:


               
               GTTCCAAGTAATGCAAATACCTGACTAGTCTCTCTTCTGCTTACCAACAACTAAGGTTCC
CCATCATGAATGCAAGATACAGTCCAAAGTCTTTGGCATGATGTGAATATTTTTCTACAG
CCTGACCTTGCAGCATCATCTCTGGTCACTGCCTATGTATTATAAGCTCCAGCTGCCAAA
GTCTCTTTGCTGCTCTTTCCTACCCGTGACATGTACTTTCAGCCCATTCTTGCTGTTTCC
TCTGCCTATGCCCTCCCCCACTTCTCTACCTCTACCTAACAAAATCCTCCAGTCCTTCGA
GACCCAGCCCAAAAGTTTCCTTCTCTGTGAGAACATTGCTGACCTGCTTTCACCCCAGCA
TGCCAAGCCAAAAAGCTCTCTCTTCTAGTTTCCATAGTTCTTTGTGTCCATCTCTTCAAT
AAATGCTTAATACAGCACAGAACCAGCAACCACAACATTAGCAATGGTTTAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTCCAAGTAATGCAAATACCTGACTAGTCTCTCTTCTGCTTACCAACAACTAAGGTTCC
CCATCATGAATGCAAGATACAGTCCAAAGTCTTTGGCATGATGTGAATATTTTTCTACAG
CCTGACCTTGCAGCATCATCTCTGGTCACTGCCTATGTATTATAAGCTCCAGCTGCCAAA
GTCTCTTTGCTGCTCTTTCCTACCCGTGACATGTACTTTCAGCCCATTCTTGCTGTTTCC
TCTGCCTATGCCCTCCCCCACTTCTCTACCTCTACCTAACAAAATCCTCCAGTCCTTCGA
GACCCAGCCCAAAAGTTTCCTTCTCTGTGAGAACATTGCTGACCTGCTTTCACCCCAGCA
TGCCAAGCCAAAAAGCTCTCTCTTCTAGTTTCCATAGTTCTTTGTGTCCATCTCTTCAAT
AAATGCTTAATACAGCACAGAACCAGCAACCACAACATTAGCAATGGTTTAGT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               295-414, - strand, RNAz p=0.867157

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               295-414, - strand, RNAz p=0.867157

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               1-175, gnl|bosTau2|chr9 (33987442-33987272)
               

               
               1-175, gnl|canFam2|chr12 (51762799-51763101)
               

               
               1-175, gnl|dasNov1|scaffold_5244 (53676-53340)
               

               
               1-175, gnl|hg17|chr6 (90325365-90325679)
               

               
               1-175, gnl|Hg17|chr6 (90325482-90325660)
               

               
               1-175, gnl|mm7|chr4 (33146189-33145939)
               

               
               1-175, gnl|oryCun1|scaffold_214892 (49524-49842)
               

               
               1-175, gnl|panTro1|chr5 (92036003-92036317)
               

               
               1-175, gnl|rheMac2|chr4 (85419531-85419846)
               

               
               1-175, gnl|rn3|chr5 (49162868-49162652)
               


               
               179-472, gnl|bosTau2|chr9 (33987081-33986795)
               

               
               179-472, gnl|Hg17|chr6 (90325679-90325942)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-175, gnl|bosTau2|chr9 (33987442-33987272)
               

               
               1-175, gnl|canFam2|chr12 (51762799-51763101)
               

               
               1-175, gnl|dasNov1|scaffold_5244 (53676-53340)
               

               
               1-175, gnl|hg17|chr6 (90325365-90325679)
               

               
               1-175, gnl|Hg17|chr6 (90325482-90325660)
               

               
               1-175, gnl|mm7|chr4 (33146189-33145939)
               

               
               1-175, gnl|oryCun1|scaffold_214892 (49524-49842)
               

               
               1-175, gnl|panTro1|chr5 (92036003-92036317)
               

               
               1-175, gnl|rheMac2|chr4 (85419531-85419846)
               

               
               1-175, gnl|rn3|chr5 (49162868-49162652)
               


               
               179-472, gnl|bosTau2|chr9 (33987081-33986795)
               

               
               179-472, gnl|Hg17|chr6 (90325679-90325942)

	1-175, gnl\|bosTau2\|chr9 (33987442-33987272)
	1-175, gnl\|canFam2\|chr12 (51762799-51763101)
	1-175, gnl\|dasNov1\|scaffold_5244 (53676-53340)
	1-175, gnl\|hg17\|chr6 (90325365-90325679)
	1-175, gnl\|Hg17\|chr6 (90325482-90325660)
	1-175, gnl\|mm7\|chr4 (33146189-33145939)
	1-175, gnl\|oryCun1\|scaffold_214892 (49524-49842)
	1-175, gnl\|panTro1\|chr5 (92036003-92036317)
	1-175, gnl\|rheMac2\|chr4 (85419531-85419846)
	1-175, gnl\|rn3\|chr5 (49162868-49162652)

	179-472, gnl\|bosTau2\|chr9 (33987081-33986795)
	179-472, gnl\|Hg17\|chr6 (90325679-90325942)