Non-Coding RNA Search

Pig1-89D15

Sequence:


               
               GCCAAGACTATGTGGAAGTGACTCGGAAGTGGTACGCAGAGGCCATGCCCTTTCCCCTCA
ACTTCTTCCTGCCCGGCCGCATGCAGCGGCAGTACATGGAGCGGCTGCAGCTCTTGTGTG
GGGAGCACAGGCCTGAGGAGGAGGAAGAGCTGGAGAAGGAGGTACCTCTGGGACAGGGGG
CCGTTGTACAAGAGGAACCCCCAGGACGATGGCAGGGCATGGGAGTTCTGGGGCCGGGGG
GAGGCGGCGCGCTGCCCGCAGCCGCAGCCGCAAGCCGACCTTGTGTTTCCCCGATAGCTC
TACCAGGAGGCTCGGGAATGCCTGACCCTTCTCTCTCAGCGCCTGGGCGCTCAGAAATTC
TTCTTTGGAGATGCGTGAGTCTGACTCCAGGGGAATCATAGGTGGCTTGGAAGGAGATAC
AGGTTCAGGTGTCGCTGCAGGGGCGGNGGTGGGCTCAGGCTCTGGACCAGAGGACCTTGG
GACAGATACTGGGTCTGGTGACAGTGGGGCTGTGTGTGGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCAAGACTATGTGGAAGTGACTCGGAAGTGGTACGCAGAGGCCATGCCCTTTCCCCTCA
ACTTCTTCCTGCCCGGCCGCATGCAGCGGCAGTACATGGAGCGGCTGCAGCTCTTGTGTG
GGGAGCACAGGCCTGAGGAGGAGGAAGAGCTGGAGAAGGAGGTACCTCTGGGACAGGGGG
CCGTTGTACAAGAGGAACCCCCAGGACGATGGCAGGGCATGGGAGTTCTGGGGCCGGGGG
GAGGCGGCGCGCTGCCCGCAGCCGCAGCCGCAAGCCGACCTTGTGTTTCCCCGATAGCTC
TACCAGGAGGCTCGGGAATGCCTGACCCTTCTCTCTCAGCGCCTGGGCGCTCAGAAATTC
TTCTTTGGAGATGCGTGAGTCTGACTCCAGGGGAATCATAGGTGGCTTGGAAGGAGATAC
AGGTTCAGGTGTCGCTGCAGGGGCGGNGGTGGGCTCAGGCTCTGGACCAGAGGACCTTGG
GACAGATACTGGGTCTGGTGACAGTGGGGCTGTGTGTGGGG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               318-435, + strand, RNAz p=0.774672

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               318-435, + strand, RNAz p=0.774672

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-521, gnl|bosTau2|chr3 (9277453-9277967)
               

               
               1-521, gnl|Hg17|chr1 (151995270-151995792)
               

               
               1-521, gnl|Mm7|chr3 (89336837-89336381)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-521, gnl|bosTau2|chr3 (9277453-9277967)
               

               
               1-521, gnl|Hg17|chr1 (151995270-151995792)
               

               
               1-521, gnl|Mm7|chr3 (89336837-89336381)

	1-521, gnl\|bosTau2\|chr3 (9277453-9277967)
	1-521, gnl\|Hg17\|chr1 (151995270-151995792)
	1-521, gnl\|Mm7\|chr3 (89336837-89336381)