Non-Coding RNA Search

Pig1-89N05

Sequence:


               
               GCAGGCAGCTGGGCGGGCTTTTCCGGACTGGCTTTGGGAAAATTGCAGAGAGCACTATTC
AAAGGAGGACCCAGAGTGTAGATCCTGGGTATCTGGATTGAAGGATGCTCAGAATCCAGC
GGCTGGACCAGCCCATTGAATACTGAGTGAAAGGAGCACTTAATCATATCTTTGGTGCAG
CTGGGCGGGAGATGTGGGGGCTGGTTGCCCTGCTCCTGGGTGGTCAGTGACTTGGCAGCC
CAGAAAGTGCCTCTCCACAGGGTGCTGATCCCTTTTCTGGAAAGCCCTGCCCGAGGGCTT
CATGCCTCTGGGGTCAGCCTGAGCCTGCTACAGGCCAGAGCAAGGGGACGAAGGTTTACT
TCTTCCCCTCCTGGCCTTCCAGCCTCACCTTCTCCATGCATCACAGAGAGAAGCAAGCAC
AAGGCCCGGAGGAGACCACGATCCAGCTCTTCCTCCTCTTCTTCCAGTTCTTCTAGCTCC
TCTTCCTCCTCGTCCTCCTCCTCTTCCTCCAGCGATGGCCGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAGGCAGCTGGGCGGGCTTTTCCGGACTGGCTTTGGGAAAATTGCAGAGAGCACTATTC
AAAGGAGGACCCAGAGTGTAGATCCTGGGTATCTGGATTGAAGGATGCTCAGAATCCAGC
GGCTGGACCAGCCCATTGAATACTGAGTGAAAGGAGCACTTAATCATATCTTTGGTGCAG
CTGGGCGGGAGATGTGGGGGCTGGTTGCCCTGCTCCTGGGTGGTCAGTGACTTGGCAGCC
CAGAAAGTGCCTCTCCACAGGGTGCTGATCCCTTTTCTGGAAAGCCCTGCCCGAGGGCTT
CATGCCTCTGGGGTCAGCCTGAGCCTGCTACAGGCCAGAGCAAGGGGACGAAGGTTTACT
TCTTCCCCTCCTGGCCTTCCAGCCTCACCTTCTCCATGCATCACAGAGAGAAGCAAGCAC
AAGGCCCGGAGGAGACCACGATCCAGCTCTTCCTCCTCTTCTTCCAGTTCTTCTAGCTCC
TCTTCCTCCTCGTCCTCCTCCTCTTCCTCCAGCGATGGCCGGA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               313-523, - strand, RNAz p=0.986928

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               313-523, - strand, RNAz p=0.986928

Predicted microRNA(s): 1 entry(ies)

More info

Predicted microRNA(s): 1 entry(ies)

Help | Less info


               
               338-459, - strand, RNAmicro p=0.999799

Predicted microRNA(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               338-459, - strand, RNAmicro p=0.999799

Similar Transcript(s): 6 entry(ies)

More info

Similar Transcript(s): 6 entry(ies)

Help | Less info


               
               313-441, 342766 BARC 5BOV Bos taurus cDNA 5', mRNA sequence (gb|BG692905.1|), 
blast E-value=0, identity=98.45% 
               

               
               323-441, LIB3934-043-A1-K1-D12 LIB3934 Canis familiaris cDNA clone 
(gb|DN394246.1|), blast E-value=1.00053e-42, identity=94.12% 
               

               
               313-441, LB02729.CR_O11 GC_BGC-27 Bos taurus cDNA clone IMAGE (gb|DV894251.1|), 
blast E-value=0, identity=98.45% 
               

               
               313-441, sh2P0045G01_F.ab1 adult sheep fracture callus 7d Ovis aries cDNA, 
(gb|DY502932.1|), blast E-value=0, identity=96.9% 
               

               
               313-441, sh3P0032I01_F.ab1 adult sheep fracture callus 10d Ovis aries cDNA, 
(gb|DY515822.1|), blast E-value=0, identity=98.45% 
               

               
               313-441, LB02946.CR_J05 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb|EE353496.1|), 
blast E-value=0, identity=98.45%

Similar Transcript(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               313-441, 342766 BARC 5BOV Bos taurus cDNA 5', mRNA sequence (gb|BG692905.1|), 
blast E-value=0, identity=98.45% 
               

               
               323-441, LIB3934-043-A1-K1-D12 LIB3934 Canis familiaris cDNA clone 
(gb|DN394246.1|), blast E-value=1.00053e-42, identity=94.12% 
               

               
               313-441, LB02729.CR_O11 GC_BGC-27 Bos taurus cDNA clone IMAGE (gb|DV894251.1|), 
blast E-value=0, identity=98.45% 
               

               
               313-441, sh2P0045G01_F.ab1 adult sheep fracture callus 7d Ovis aries cDNA, 
(gb|DY502932.1|), blast E-value=0, identity=96.9% 
               

               
               313-441, sh3P0032I01_F.ab1 adult sheep fracture callus 10d Ovis aries cDNA, 
(gb|DY515822.1|), blast E-value=0, identity=98.45% 
               

               
               313-441, LB02946.CR_J05 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb|EE353496.1|), 
blast E-value=0, identity=98.45%

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               3' of AB040953, -

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               3' of AB040953, -

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-281, gnl|bosTau2|chr17 (27450585-27450858)
               


               
               313-523, gnl|bosTau2|chr17 (27450863-27451073)
               

               
               313-523, gnl|Hg17|chr12 (121990929-121991141)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-281, gnl|bosTau2|chr17 (27450585-27450858)
               


               
               313-523, gnl|bosTau2|chr17 (27450863-27451073)
               

               
               313-523, gnl|Hg17|chr12 (121990929-121991141)

	313-441, 342766 BARC 5BOV Bos taurus cDNA 5', mRNA sequence (gb\|BG692905.1\|), blast E-value=0, identity=98.45%
	323-441, LIB3934-043-A1-K1-D12 LIB3934 Canis familiaris cDNA clone (gb\|DN394246.1\|), blast E-value=1.00053e-42, identity=94.12%
	313-441, LB02729.CR_O11 GC_BGC-27 Bos taurus cDNA clone IMAGE (gb\|DV894251.1\|), blast E-value=0, identity=98.45%
	313-441, sh2P0045G01_F.ab1 adult sheep fracture callus 7d Ovis aries cDNA, (gb\|DY502932.1\|), blast E-value=0, identity=96.9%
	313-441, sh3P0032I01_F.ab1 adult sheep fracture callus 10d Ovis aries cDNA, (gb\|DY515822.1\|), blast E-value=0, identity=98.45%
	313-441, LB02946.CR_J05 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb\|EE353496.1\|), blast E-value=0, identity=98.45%

	1-281, gnl\|bosTau2\|chr17 (27450585-27450858)

	313-523, gnl\|bosTau2\|chr17 (27450863-27451073)
	313-523, gnl\|Hg17\|chr12 (121990929-121991141)