Non-Coding RNA Search

Pig1-91B01

Sequence:


               
               GCAGCTGTATGGCCGCAGCCCGCCCGCAGTTGCCATGCAGGCCGGCCCCCGTGCATTGGC
CGTTCAGCGTGGTATGAACATGGGGGTTAACTTAATGCCAACCCCTGCCTATAATGTCAA
TTCCATGAATATGAACACCTTGAACGCCATGAACAGCTATCGAATGACACAGCCCATGAT
GAACAGCAGTTACCATAGTAACCCTGCCTACATGAACCAGACAGCACAGTATCCTATGCA
GATGCAGATGGGGATGATGGGGAGCCAGGCCTATACCCAGCAGCCTATGCAGCCAAACCC
TCATGGAAACATGATGTACACTGGCCCCTCCCATCACAGCTACATGAACGCTGCTGGCGT
GCCCAAGCAGTCACTCAACGGACCTTACATGAGAAGATGAGCAAGGCGGACTTAGGGTGA
AAAACTTAAATATATATAAATAAAGGAACCTTTTATACTGAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAGCTGTATGGCCGCAGCCCGCCCGCAGTTGCCATGCAGGCCGGCCCCCGTGCATTGGC
CGTTCAGCGTGGTATGAACATGGGGGTTAACTTAATGCCAACCCCTGCCTATAATGTCAA
TTCCATGAATATGAACACCTTGAACGCCATGAACAGCTATCGAATGACACAGCCCATGAT
GAACAGCAGTTACCATAGTAACCCTGCCTACATGAACCAGACAGCACAGTATCCTATGCA
GATGCAGATGGGGATGATGGGGAGCCAGGCCTATACCCAGCAGCCTATGCAGCCAAACCC
TCATGGAAACATGATGTACACTGGCCCCTCCCATCACAGCTACATGAACGCTGCTGGCGT
GCCCAAGCAGTCACTCAACGGACCTTACATGAGAAGATGAGCAAGGCGGACTTAGGGTGA
AAAACTTAAATATATATAAATAAAGGAACCTTTTATACTGAC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               Q8C6L0_MOUSE

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               Q8C6L0_MOUSE

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               1-119, - strand, RNAz p=0.671409
               

               
               1-120, - strand, RNAz p=0.995332

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, - strand, RNAz p=0.671409
               

               
               1-120, - strand, RNAz p=0.995332

Aligned organism(s): 19 entry(ies)

More info

Aligned organism(s): 19 entry(ies)

Help | Less info


               
               1-462, gnl|bosTau2|chr27 (23300428-23299967)
               

               
               1-462, gnl|canFam2|chr16 (26668474-26668150)
               

               
               1-462, gnl|danRer3|chr9 (26153895-26154196)
               

               
               1-462, gnl|dasNov1|scaffold_2475 (68504-68180)
               

               
               1-462, gnl|echTel1|scaffold_298167 (7702-8026)
               

               
               1-462, gnl|fr1|chrUn (62752462-62752764)
               

               
               1-462, gnl|galGal2|chrUn (848176-848500)
               

               
               1-462, gnl|hg17|chr8 (41908870-41909194)
               

               
               1-462, gnl|Hg17|chr8 (41909279-41908818)
               

               
               1-462, gnl|loxAfr1|scaffold_2557 (73637-73312)
               

               
               1-462, gnl|mm7|chr8 (21725971-21725647)
               

               
               1-462, gnl|Mm7|chr8 (21725560-21726021)
               

               
               1-462, gnl|monDom2|scaffold_1 (80154735-80154411)
               

               
               1-462, gnl|oryCun1|scaffold_192802 (7437-7110)
               

               
               1-462, gnl|panTro1|chr7 (43326437-43326761)
               

               
               1-462, gnl|rheMac2|chr8 (42513508-42513832)
               

               
               1-462, gnl|rn3|chr16 (73556782-73557106)
               

               
               1-462, gnl|tetNig1|chr12 (11291523-11291225)
               

               
               1-462, gnl|xenTro1|scaffold_106 (495649-495334)

Aligned organism(s): 19 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-462, gnl|bosTau2|chr27 (23300428-23299967)
               

               
               1-462, gnl|canFam2|chr16 (26668474-26668150)
               

               
               1-462, gnl|danRer3|chr9 (26153895-26154196)
               

               
               1-462, gnl|dasNov1|scaffold_2475 (68504-68180)
               

               
               1-462, gnl|echTel1|scaffold_298167 (7702-8026)
               

               
               1-462, gnl|fr1|chrUn (62752462-62752764)
               

               
               1-462, gnl|galGal2|chrUn (848176-848500)
               

               
               1-462, gnl|hg17|chr8 (41908870-41909194)
               

               
               1-462, gnl|Hg17|chr8 (41909279-41908818)
               

               
               1-462, gnl|loxAfr1|scaffold_2557 (73637-73312)
               

               
               1-462, gnl|mm7|chr8 (21725971-21725647)
               

               
               1-462, gnl|Mm7|chr8 (21725560-21726021)
               

               
               1-462, gnl|monDom2|scaffold_1 (80154735-80154411)
               

               
               1-462, gnl|oryCun1|scaffold_192802 (7437-7110)
               

               
               1-462, gnl|panTro1|chr7 (43326437-43326761)
               

               
               1-462, gnl|rheMac2|chr8 (42513508-42513832)
               

               
               1-462, gnl|rn3|chr16 (73556782-73557106)
               

               
               1-462, gnl|tetNig1|chr12 (11291523-11291225)
               

               
               1-462, gnl|xenTro1|scaffold_106 (495649-495334)

	1-119, - strand, RNAz p=0.671409
	1-120, - strand, RNAz p=0.995332

	1-462, gnl\|bosTau2\|chr27 (23300428-23299967)
	1-462, gnl\|canFam2\|chr16 (26668474-26668150)
	1-462, gnl\|danRer3\|chr9 (26153895-26154196)
	1-462, gnl\|dasNov1\|scaffold_2475 (68504-68180)
	1-462, gnl\|echTel1\|scaffold_298167 (7702-8026)
	1-462, gnl\|fr1\|chrUn (62752462-62752764)
	1-462, gnl\|galGal2\|chrUn (848176-848500)
	1-462, gnl\|hg17\|chr8 (41908870-41909194)
	1-462, gnl\|Hg17\|chr8 (41909279-41908818)
	1-462, gnl\|loxAfr1\|scaffold_2557 (73637-73312)
	1-462, gnl\|mm7\|chr8 (21725971-21725647)
	1-462, gnl\|Mm7\|chr8 (21725560-21726021)
	1-462, gnl\|monDom2\|scaffold_1 (80154735-80154411)
	1-462, gnl\|oryCun1\|scaffold_192802 (7437-7110)
	1-462, gnl\|panTro1\|chr7 (43326437-43326761)
	1-462, gnl\|rheMac2\|chr8 (42513508-42513832)
	1-462, gnl\|rn3\|chr16 (73556782-73557106)
	1-462, gnl\|tetNig1\|chr12 (11291523-11291225)
	1-462, gnl\|xenTro1\|scaffold_106 (495649-495334)