Non-Coding RNA Search

Pig1-91O13

Sequence:


               
               CAGGTACCGGGAAACTGGCGGCGGCCACTGGACCCTTGTTTTGGCTGGGAAAGAAACCCT
GAAGTGCCGCTGGCGCTGTTTGTCCTGAACAGGCGGCGCCTGTGTGAGCGGCTGCGGAAG
AACCCTGCGGTGCAGGCCGGCTCTGTGGTGGTGCTGCAGGGCGGGGAGGAGACGCAGCGC
TACTGCACTGACACTGGGGTCCTTTTCCGCCAGGAGTCCTTCTTTCACTGGGCGTTTGGT
GTCACCGAGCCAGGCTGCTACGGCGTGATTGACATAGACTCTGGGACATCCACTCTGTTC
GTGCCCAGGCTTCCTCCCAGCCATGCCACCTGGATGGGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGGTACCGGGAAACTGGCGGCGGCCACTGGACCCTTGTTTTGGCTGGGAAAGAAACCCT
GAAGTGCCGCTGGCGCTGTTTGTCCTGAACAGGCGGCGCCTGTGTGAGCGGCTGCGGAAG
AACCCTGCGGTGCAGGCCGGCTCTGTGGTGGTGCTGCAGGGCGGGGAGGAGACGCAGCGC
TACTGCACTGACACTGGGGTCCTTTTCCGCCAGGAGTCCTTCTTTCACTGGGCGTTTGGT
GTCACCGAGCCAGGCTGCTACGGCGTGATTGACATAGACTCTGGGACATCCACTCTGTTC
GTGCCCAGGCTTCCTCCCAGCCATGCCACCTGGATGGGAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61828857|ref|XP_588059.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61828857|ref|XP_588059.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               37-145, - strand, RNAz p=0.637334
               

               
               68-187, + strand, RNAz p=0.704246

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               37-145, - strand, RNAz p=0.637334
               

               
               68-187, + strand, RNAz p=0.704246

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               31-214, gnl|bosTau2|chr18 (37088525-37088710)
               

               
               31-214, gnl|canFam2|chr1 (121583382-121583168)
               

               
               31-214, gnl|danRer3|chrNA (82660748-82660569)
               

               
               31-214, gnl|dasNov1|scaffold_119997 (2968-3161)
               

               
               31-214, gnl|fr1|chrUn (283857295-283857499)
               

               
               31-214, gnl|hg17|chr19 (38695315-38695542)
               

               
               31-214, gnl|Hg17|chr19 (38695523-38695338)
               

               
               31-214, gnl|mm7|chr7 (31809027-31808799)
               

               
               31-214, gnl|Mm7|chr7 (31808816-31809001)
               

               
               31-214, gnl|monDom2|scaffold_35 (2498735-2498529)
               

               
               31-214, gnl|panTro1|chr20 (35210991-35211227)
               

               
               31-214, gnl|rheMac2|chr19 (40036304-40036531)
               

               
               31-214, gnl|rn3|chr1 (87508648-87508418)
               

               
               31-214, gnl|tetNig1|chrUn_random (88030122-88030350)
               

               
               31-214, gnl|xenTro1|scaffold_129 (706611-706814)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               31-214, gnl|bosTau2|chr18 (37088525-37088710)
               

               
               31-214, gnl|canFam2|chr1 (121583382-121583168)
               

               
               31-214, gnl|danRer3|chrNA (82660748-82660569)
               

               
               31-214, gnl|dasNov1|scaffold_119997 (2968-3161)
               

               
               31-214, gnl|fr1|chrUn (283857295-283857499)
               

               
               31-214, gnl|hg17|chr19 (38695315-38695542)
               

               
               31-214, gnl|Hg17|chr19 (38695523-38695338)
               

               
               31-214, gnl|mm7|chr7 (31809027-31808799)
               

               
               31-214, gnl|Mm7|chr7 (31808816-31809001)
               

               
               31-214, gnl|monDom2|scaffold_35 (2498735-2498529)
               

               
               31-214, gnl|panTro1|chr20 (35210991-35211227)
               

               
               31-214, gnl|rheMac2|chr19 (40036304-40036531)
               

               
               31-214, gnl|rn3|chr1 (87508648-87508418)
               

               
               31-214, gnl|tetNig1|chrUn_random (88030122-88030350)
               

               
               31-214, gnl|xenTro1|scaffold_129 (706611-706814)

	37-145, - strand, RNAz p=0.637334
	68-187, + strand, RNAz p=0.704246

	31-214, gnl\|bosTau2\|chr18 (37088525-37088710)
	31-214, gnl\|canFam2\|chr1 (121583382-121583168)
	31-214, gnl\|danRer3\|chrNA (82660748-82660569)
	31-214, gnl\|dasNov1\|scaffold_119997 (2968-3161)
	31-214, gnl\|fr1\|chrUn (283857295-283857499)
	31-214, gnl\|hg17\|chr19 (38695315-38695542)
	31-214, gnl\|Hg17\|chr19 (38695523-38695338)
	31-214, gnl\|mm7\|chr7 (31809027-31808799)
	31-214, gnl\|Mm7\|chr7 (31808816-31809001)
	31-214, gnl\|monDom2\|scaffold_35 (2498735-2498529)
	31-214, gnl\|panTro1\|chr20 (35210991-35211227)
	31-214, gnl\|rheMac2\|chr19 (40036304-40036531)
	31-214, gnl\|rn3\|chr1 (87508648-87508418)
	31-214, gnl\|tetNig1\|chrUn_random (88030122-88030350)
	31-214, gnl\|xenTro1\|scaffold_129 (706611-706814)