Non-Coding RNA Search

Pig1-92F02

Sequence:


               
               TACGTTTCTTATTAGTAAAGTTCACTGGAAAGCCAGCTCTCCATGTTACACTAATGACAG
TTTGTCCTCCTTGCAAAGGCGGGGCATTTCTGCCACTTGACTTGAGGAGCTTTTTAAAAA
AATATTTTTTGAATTTGTAATGCTTTTGCTGTTTACATGCAGTCCCAAGAAATGGGTTGT
TGGTGCTTTGGAATGTGTTATGGTCCCACATTTGGTATTCATTGTACATTTTGTATTTTC
TTTAAAGAGATTTCTTTGCATAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TACGTTTCTTATTAGTAAAGTTCACTGGAAAGCCAGCTCTCCATGTTACACTAATGACAG
TTTGTCCTCCTTGCAAAGGCGGGGCATTTCTGCCACTTGACTTGAGGAGCTTTTTAAAAA
AATATTTTTTGAATTTGTAATGCTTTTGCTGTTTACATGCAGTCCCAAGAAATGGGTTGT
TGGTGCTTTGGAATGTGTTATGGTCCCACATTTGGTATTCATTGTACATTTTGTATTTTC
TTTAAAGAGATTTCTTTGCATAG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               4-119, + strand, RNAz p=0.884481
               

               
               145-263, - strand, RNAz p=0.748586

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               4-119, + strand, RNAz p=0.884481
               

               
               145-263, - strand, RNAz p=0.748586

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_020935, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_020935, +

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               4-263, gnl|bosTau2|chr2 (59635204-59635468)
               

               
               4-263, gnl|canFam2|chr17 (43240811-43240628)
               

               
               4-263, gnl|echTel1|scaffold_59727 (348-525)
               

               
               4-263, gnl|hg17|chr2 (84896892-84897082)
               

               
               4-263, gnl|Hg17|chr2 (219144642-219144373)
               

               
               4-263, gnl|loxAfr1|scaffold_16423 (51545-51734)
               

               
               4-263, gnl|Mm7|chr1 (74678533-74678304)
               

               
               4-263, gnl|panTro1|chr12 (87762772-87762962)
               

               
               4-263, gnl|rheMac2|chr13 (85307539-85307725)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-263, gnl|bosTau2|chr2 (59635204-59635468)
               

               
               4-263, gnl|canFam2|chr17 (43240811-43240628)
               

               
               4-263, gnl|echTel1|scaffold_59727 (348-525)
               

               
               4-263, gnl|hg17|chr2 (84896892-84897082)
               

               
               4-263, gnl|Hg17|chr2 (219144642-219144373)
               

               
               4-263, gnl|loxAfr1|scaffold_16423 (51545-51734)
               

               
               4-263, gnl|Mm7|chr1 (74678533-74678304)
               

               
               4-263, gnl|panTro1|chr12 (87762772-87762962)
               

               
               4-263, gnl|rheMac2|chr13 (85307539-85307725)

	4-119, + strand, RNAz p=0.884481
	145-263, - strand, RNAz p=0.748586

	4-263, gnl\|bosTau2\|chr2 (59635204-59635468)
	4-263, gnl\|canFam2\|chr17 (43240811-43240628)
	4-263, gnl\|echTel1\|scaffold_59727 (348-525)
	4-263, gnl\|hg17\|chr2 (84896892-84897082)
	4-263, gnl\|Hg17\|chr2 (219144642-219144373)
	4-263, gnl\|loxAfr1\|scaffold_16423 (51545-51734)
	4-263, gnl\|Mm7\|chr1 (74678533-74678304)
	4-263, gnl\|panTro1\|chr12 (87762772-87762962)
	4-263, gnl\|rheMac2\|chr13 (85307539-85307725)