Non-Coding RNA Search

Pig1-95J12

Sequence:


               
               ATGCGCTCTGGACTGTAAGCGGTGTATGAGGGTCAGCTGGTAGTATTTGTATTATTACTC
TATTTAGCACCAGACCGTGGGTGTGGGAGGGCACACCCAGCGACCTCTGCCCTCTCCTGT
CCTTGCAAGTGCTGAGGCCTAAGCCTCGGCCTGAAGGGAATAGGGAGGGTCCCAGGTCCC
CACCCCTTCAGGGCTGTGTCCAAAGGGCCACTCCCCAGGTAAGGCCTTGAGACAACCCAG
GGTGAAGGAATGGACGGCTTCCAGCTTGGAACCTCCCAGAAGCCAGAAGGGCCTTCGGAG
CTTGGTTAGTACAAGATCCCCACTCAGCTCCAAGAGGGACAAGGATTGATTTCACGTCCT
CCACCTGCAGCACCACAGTCCCAGCCAACCAACCTCCTCGCAGTCCAACCTGTCCCTTTT
CCCGCTGCCCCCTGCTGGGCCTGTTCCCACCTTCTGTGGACCGGGAACAGCAGGCCCAAG
GAGAACCACTTGGGACCGGGACCAGCTCAGGTGTCGGTAGCATGAGATGCCAGCATGGTC
CTGAGCTCTCTGGCAGTGGTGGCGCCAAATCAAAGCTACTCGTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGCGCTCTGGACTGTAAGCGGTGTATGAGGGTCAGCTGGTAGTATTTGTATTATTACTC
TATTTAGCACCAGACCGTGGGTGTGGGAGGGCACACCCAGCGACCTCTGCCCTCTCCTGT
CCTTGCAAGTGCTGAGGCCTAAGCCTCGGCCTGAAGGGAATAGGGAGGGTCCCAGGTCCC
CACCCCTTCAGGGCTGTGTCCAAAGGGCCACTCCCCAGGTAAGGCCTTGAGACAACCCAG
GGTGAAGGAATGGACGGCTTCCAGCTTGGAACCTCCCAGAAGCCAGAAGGGCCTTCGGAG
CTTGGTTAGTACAAGATCCCCACTCAGCTCCAAGAGGGACAAGGATTGATTTCACGTCCT
CCACCTGCAGCACCACAGTCCCAGCCAACCAACCTCCTCGCAGTCCAACCTGTCCCTTTT
CCCGCTGCCCCCTGCTGGGCCTGTTCCCACCTTCTGTGGACCGGGAACAGCAGGCCCAAG
GAGAACCACTTGGGACCGGGACCAGCTCAGGTGTCGGTAGCATGAGATGCCAGCATGGTC
CTGAGCTCTCTGGCAGTGGTGGCGCCAAATCAAAGCTACTCGTA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               96-285, - strand, RNAz p=0.99993

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               96-285, - strand, RNAz p=0.99993

Predicted microRNA(s): 3 entry(ies)

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Predicted microRNA(s): 3 entry(ies)

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               102-176, + strand, RNAmicro p=1
               

               
               176-271, - strand, RNAmicro p=0.942437
               

               
               101-171, - strand, RNAmicro p=0.938893

Predicted microRNA(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               102-176, + strand, RNAmicro p=1
               

               
               176-271, - strand, RNAmicro p=0.942437
               

               
               101-171, - strand, RNAmicro p=0.938893

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               96-577, gnl|bosTau2|chr3 (67492387-67491920)
               

               
               96-577, gnl|Hg17|chr1 (46369149-46368651)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               96-577, gnl|bosTau2|chr3 (67492387-67491920)
               

               
               96-577, gnl|Hg17|chr1 (46369149-46368651)

	102-176, + strand, RNAmicro p=1
	176-271, - strand, RNAmicro p=0.942437
	101-171, - strand, RNAmicro p=0.938893

	96-577, gnl\|bosTau2\|chr3 (67492387-67491920)
	96-577, gnl\|Hg17\|chr1 (46369149-46368651)