Non-Coding RNA Search

Pig1-98N13

Sequence:


               
               CCGTGGGGGTGATGTGGGGCTGGTGCCAGCGGAAAATGCCATTCTATGGGCATGCCCGGG
GCCGTGTCAGTCGTCCCAGGATCCTGGGCGAGCCCCCAGCCCCGCCAGTGGCTGGGTCCA
TCAGTGCAGCTGCACCCAGTGCCTGCTGTGGAACTCCCTGCTCCCACAATGAGGCTGCCG
CCATGGAGGCCACCGCTGCATCAGTTGGGCCCTTTCCCTCAGCCAGCCACCCAAGCCTCA
GTACCCAGGTCGCCATGGATCGGATGAAGAAGATCAAACGGCAGCTGTCAATGACAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGTGGGGGTGATGTGGGGCTGGTGCCAGCGGAAAATGCCATTCTATGGGCATGCCCGGG
GCCGTGTCAGTCGTCCCAGGATCCTGGGCGAGCCCCCAGCCCCGCCAGTGGCTGGGTCCA
TCAGTGCAGCTGCACCCAGTGCCTGCTGTGGAACTCCCTGCTCCCACAATGAGGCTGCCG
CCATGGAGGCCACCGCTGCATCAGTTGGGCCCTTTCCCTCAGCCAGCCACCCAAGCCTCA
GTACCCAGGTCGCCATGGATCGGATGAAGAAGATCAAACGGCAGCTGTCAATGACAC

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               4-117, - strand, RNAz p=0.959497
               

               
               122-250, - strand, RNAz p=0.789723
               

               
               143-250, - strand, RNAz p=0.86282

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               4-117, - strand, RNAz p=0.959497
               

               
               122-250, - strand, RNAz p=0.789723
               

               
               143-250, - strand, RNAz p=0.86282

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               4-250, gnl|bosTau2|chr27 (15992041-15992290)
               

               
               4-250, gnl|canFam2|chrX (40762315-40762631)
               

               
               4-250, gnl|echTel1|scaffold_214877 (3537-3260)
               

               
               4-250, gnl|hg17|chrX (46838668-46838977)
               

               
               4-250, gnl|Hg17|chrX (46838727-46838966)
               

               
               4-250, gnl|loxAfr1|scaffold_16183 (52024-51700)
               

               
               4-250, gnl|mm7|chrX (19126005-19126321)
               

               
               4-250, gnl|Mm7|chrX (19126061-19126310)
               

               
               4-250, gnl|monDom2|scaffold_134 (546927-546644)
               

               
               4-250, gnl|oryCun1|scaffold_200569 (36617-36306)
               

               
               4-250, gnl|panTro1|chrX (48420545-48420855)
               

               
               4-250, gnl|rn3|chrX (12922492-12922175)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-250, gnl|bosTau2|chr27 (15992041-15992290)
               

               
               4-250, gnl|canFam2|chrX (40762315-40762631)
               

               
               4-250, gnl|echTel1|scaffold_214877 (3537-3260)
               

               
               4-250, gnl|hg17|chrX (46838668-46838977)
               

               
               4-250, gnl|Hg17|chrX (46838727-46838966)
               

               
               4-250, gnl|loxAfr1|scaffold_16183 (52024-51700)
               

               
               4-250, gnl|mm7|chrX (19126005-19126321)
               

               
               4-250, gnl|Mm7|chrX (19126061-19126310)
               

               
               4-250, gnl|monDom2|scaffold_134 (546927-546644)
               

               
               4-250, gnl|oryCun1|scaffold_200569 (36617-36306)
               

               
               4-250, gnl|panTro1|chrX (48420545-48420855)
               

               
               4-250, gnl|rn3|chrX (12922492-12922175)

	4-117, - strand, RNAz p=0.959497
	122-250, - strand, RNAz p=0.789723
	143-250, - strand, RNAz p=0.86282

	4-250, gnl\|bosTau2\|chr27 (15992041-15992290)
	4-250, gnl\|canFam2\|chrX (40762315-40762631)
	4-250, gnl\|echTel1\|scaffold_214877 (3537-3260)
	4-250, gnl\|hg17\|chrX (46838668-46838977)
	4-250, gnl\|Hg17\|chrX (46838727-46838966)
	4-250, gnl\|loxAfr1\|scaffold_16183 (52024-51700)
	4-250, gnl\|mm7\|chrX (19126005-19126321)
	4-250, gnl\|Mm7\|chrX (19126061-19126310)
	4-250, gnl\|monDom2\|scaffold_134 (546927-546644)
	4-250, gnl\|oryCun1\|scaffold_200569 (36617-36306)
	4-250, gnl\|panTro1\|chrX (48420545-48420855)
	4-250, gnl\|rn3\|chrX (12922492-12922175)