Non-Coding RNA Search

Pig1-99M06

Sequence:


               
               ACACAGCATATACATGTTAACTCCAAGACTACGGGTCCTAAAGGAGCTGCCACTGGCAAA
TCTCAGAAGACAGCGTGCCAGCAGAAACCCCAGCCGGCACAGCCTGCCATCAAAACAGAC
CTTGGCACGGCTGAGAAGTCCCCGGTTGAACCATCGTTTTGCTCAGATAAGGTCCAAGCA
CCCTCAGAGCCAGAGCAGGAGGGCCTCACTCCTTCTGACCTGGCCAAGATAGCCAAAGTG
ATGAGAAACTTTCTTAAGGTGGATGTGGGTTCTATGGCCTCCTTCAGTGTGGGCAGCAGC
CAAGACCTGGACCGGCTCAGCTTCCAGAGCAGCAAGATGAGCGACCTGTTCATCCGCTTC
CCAGAGAACCTCTTGCTGCACCGGGTGGAAAATGCCCAGGGCCACATCCTCTATGCTTTC
TTGGTGGAGAGCAAGGAACGAGAGGGGCGAGTGGTGCACTTTGCCGTGCTCAGGGCCGAG
ACAGCCACCTCTGTGGCCAAGATGCTGAGCATCTTCACAGAGTTCAACTCCGATTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACACAGCATATACATGTTAACTCCAAGACTACGGGTCCTAAAGGAGCTGCCACTGGCAAA
TCTCAGAAGACAGCGTGCCAGCAGAAACCCCAGCCGGCACAGCCTGCCATCAAAACAGAC
CTTGGCACGGCTGAGAAGTCCCCGGTTGAACCATCGTTTTGCTCAGATAAGGTCCAAGCA
CCCTCAGAGCCAGAGCAGGAGGGCCTCACTCCTTCTGACCTGGCCAAGATAGCCAAAGTG
ATGAGAAACTTTCTTAAGGTGGATGTGGGTTCTATGGCCTCCTTCAGTGTGGGCAGCAGC
CAAGACCTGGACCGGCTCAGCTTCCAGAGCAGCAAGATGAGCGACCTGTTCATCCGCTTC
CCAGAGAACCTCTTGCTGCACCGGGTGGAAAATGCCCAGGGCCACATCCTCTATGCTTTC
TTGGTGGAGAGCAAGGAACGAGAGGGGCGAGTGGTGCACTTTGCCGTGCTCAGGGCCGAG
ACAGCCACCTCTGTGGCCAAGATGCTGAGCATCTTCACAGAGTTCAACTCCGATTGG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               160-279, - strand, RNAz p=0.672337
               

               
               400-519, + strand, RNAz p=0.963388

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               160-279, - strand, RNAz p=0.672337
               

               
               400-519, + strand, RNAz p=0.963388

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               309-423, - strand, RNAmicro p=0.996163

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               309-423, - strand, RNAmicro p=0.996163

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-537, gnl|bosTau2|chr13 (54476818-54477339)
               

               
               1-537, gnl|Hg17|chr20 (43938896-43939432)
               

               
               1-537, gnl|Mm7|chr2 (164560547-164561074)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-537, gnl|bosTau2|chr13 (54476818-54477339)
               

               
               1-537, gnl|Hg17|chr20 (43938896-43939432)
               

               
               1-537, gnl|Mm7|chr2 (164560547-164561074)

	160-279, - strand, RNAz p=0.672337
	400-519, + strand, RNAz p=0.963388

	1-537, gnl\|bosTau2\|chr13 (54476818-54477339)
	1-537, gnl\|Hg17\|chr20 (43938896-43939432)
	1-537, gnl\|Mm7\|chr2 (164560547-164561074)