Non-Coding RNA Search

Pig1-9J05

Sequence:


               
               GCGGACGCGTGGGTCCTGCTCTTTCTTCCCCTCTGCAGGCCAGGCTTGTGTGGCTGAGGG
AGGATGGGGGCAGGAAAGGCTGGACCTCTAGCCGTGGCAGCCGCCTTCAATGGCCGTATT
GTTAGCTCTGGGCTGCGGTGGGGAGGGCGCCAGGGTCTGGCTGAATGAGGCATCTGTGCC
TGCTAGGTCAGGGTGCCCAGGTCAGGGGCTCTCCTGGGAGATGCCGCCCACCCCCACCTC
TGCCCAGGCCCTGCCCTTTGGCTTCCTAGTGGCCCTTGTACTGACTCCTCAGGGAACACA
GCTGTCACCGGCTGGCGAACTGTGCCATGGGCAGTTGGTTGGTGGCCTTTCCCATTATAT
GTTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGACGCGTGGGTCCTGCTCTTTCTTCCCCTCTGCAGGCCAGGCTTGTGTGGCTGAGGG
AGGATGGGGGCAGGAAAGGCTGGACCTCTAGCCGTGGCAGCCGCCTTCAATGGCCGTATT
GTTAGCTCTGGGCTGCGGTGGGGAGGGCGCCAGGGTCTGGCTGAATGAGGCATCTGTGCC
TGCTAGGTCAGGGTGCCCAGGTCAGGGGCTCTCCTGGGAGATGCCGCCCACCCCCACCTC
TGCCCAGGCCCTGCCCTTTGGCTTCCTAGTGGCCCTTGTACTGACTCCTCAGGGAACACA
GCTGTCACCGGCTGGCGAACTGTGCCATGGGCAGTTGGTTGGTGGCCTTTCCCATTATAT
GTTAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               133-274, + strand, RNAz p=0.987131

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               133-274, + strand, RNAz p=0.987131

Aligned organism(s): 10 entry(ies)

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Aligned organism(s): 10 entry(ies)

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               14-365, gnl|bosTau2|chr15 (35197753-35197417)
               

               
               14-365, gnl|canFam2|chr21 (26059839-26058706)
               

               
               14-365, gnl|dasNov1|scaffold_64965 (2755-1596)
               

               
               14-365, gnl|hg17|chr11 (74936997-74938222)
               

               
               14-365, gnl|Hg17|chr11 (74937553-74937194)
               

               
               14-365, gnl|mm7|chr7 (95395622-95394480)
               

               
               14-365, gnl|Mm7|chr7 (95395055-95395406)
               

               
               14-365, gnl|panTro1|chr9 (76220125-76221350)
               

               
               14-365, gnl|rheMac2|chr14 (73728454-73729670)
               

               
               14-365, gnl|rn3|chr1 (156764195-156763022)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               14-365, gnl|bosTau2|chr15 (35197753-35197417)
               

               
               14-365, gnl|canFam2|chr21 (26059839-26058706)
               

               
               14-365, gnl|dasNov1|scaffold_64965 (2755-1596)
               

               
               14-365, gnl|hg17|chr11 (74936997-74938222)
               

               
               14-365, gnl|Hg17|chr11 (74937553-74937194)
               

               
               14-365, gnl|mm7|chr7 (95395622-95394480)
               

               
               14-365, gnl|Mm7|chr7 (95395055-95395406)
               

               
               14-365, gnl|panTro1|chr9 (76220125-76221350)
               

               
               14-365, gnl|rheMac2|chr14 (73728454-73729670)
               

               
               14-365, gnl|rn3|chr1 (156764195-156763022)

	14-365, gnl\|bosTau2\|chr15 (35197753-35197417)
	14-365, gnl\|canFam2\|chr21 (26059839-26058706)
	14-365, gnl\|dasNov1\|scaffold_64965 (2755-1596)
	14-365, gnl\|hg17\|chr11 (74936997-74938222)
	14-365, gnl\|Hg17\|chr11 (74937553-74937194)
	14-365, gnl\|mm7\|chr7 (95395622-95394480)
	14-365, gnl\|Mm7\|chr7 (95395055-95395406)
	14-365, gnl\|panTro1\|chr9 (76220125-76221350)
	14-365, gnl\|rheMac2\|chr14 (73728454-73729670)
	14-365, gnl\|rn3\|chr1 (156764195-156763022)