Non-Coding RNA Search

Pig1-9M21

Sequence:


               
               GGGCAAATAAAGCAGCCAGCATCCCTAGTACCCTCTTTGTTTTCCTTGCCTCACAAGACC
TAGGGGAGCCCTGGAGTCCCTGGCAGAGCCCAGACTGGTTTTCCAGTTCATTTCTTATCA
TTTTATCTGTTCAGAAGACCCCAGTCCCTAGAAACCTCTCACCTCATTTGGAGGTAGGGT
GCAGACTGCAAACTACTAAACTTTAATGTGATTTACATAACTTTTTTTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGCAAATAAAGCAGCCAGCATCCCTAGTACCCTCTTTGTTTTCCTTGCCTCACAAGACC
TAGGGGAGCCCTGGAGTCCCTGGCAGAGCCCAGACTGGTTTTCCAGTTCATTTCTTATCA
TTTTATCTGTTCAGAAGACCCCAGTCCCTAGAAACCTCTCACCTCATTTGGAGGTAGGGT
GCAGACTGCAAACTACTAAACTTTAATGTGATTTACATAACTTTTTTTTTT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               44-155, - strand, RNAz p=0.578524

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               44-155, - strand, RNAz p=0.578524

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               5-229, gnl|bosTau2|chr23 (10118990-10119213)
               

               
               5-229, gnl|canFam2|chr12 (8976168-8976854)
               

               
               5-229, gnl|echTel1|scaffold_300871 (7879-7180)
               

               
               5-229, gnl|hg17|chr6 (36995701-36996440)
               

               
               5-229, gnl|Hg17|chr6 (36996150-36996378)
               

               
               5-229, gnl|loxAfr1|scaffold_23888 (22895-23622)
               

               
               5-229, gnl|mm7|chr17 (27491053-27491675)
               

               
               5-229, gnl|Mm7|chr17 (27491410-27491619)
               

               
               5-229, gnl|oryCun1|scaffold_106959 (5091-5809)
               

               
               5-229, gnl|panTro1|chr5 (37470917-37471656)
               

               
               5-229, gnl|rheMac2|chr4 (36675272-36676007)
               

               
               5-229, gnl|rn3|chr20 (7607822-7608431)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-229, gnl|bosTau2|chr23 (10118990-10119213)
               

               
               5-229, gnl|canFam2|chr12 (8976168-8976854)
               

               
               5-229, gnl|echTel1|scaffold_300871 (7879-7180)
               

               
               5-229, gnl|hg17|chr6 (36995701-36996440)
               

               
               5-229, gnl|Hg17|chr6 (36996150-36996378)
               

               
               5-229, gnl|loxAfr1|scaffold_23888 (22895-23622)
               

               
               5-229, gnl|mm7|chr17 (27491053-27491675)
               

               
               5-229, gnl|Mm7|chr17 (27491410-27491619)
               

               
               5-229, gnl|oryCun1|scaffold_106959 (5091-5809)
               

               
               5-229, gnl|panTro1|chr5 (37470917-37471656)
               

               
               5-229, gnl|rheMac2|chr4 (36675272-36676007)
               

               
               5-229, gnl|rn3|chr20 (7607822-7608431)

	5-229, gnl\|bosTau2\|chr23 (10118990-10119213)
	5-229, gnl\|canFam2\|chr12 (8976168-8976854)
	5-229, gnl\|echTel1\|scaffold_300871 (7879-7180)
	5-229, gnl\|hg17\|chr6 (36995701-36996440)
	5-229, gnl\|Hg17\|chr6 (36996150-36996378)
	5-229, gnl\|loxAfr1\|scaffold_23888 (22895-23622)
	5-229, gnl\|mm7\|chr17 (27491053-27491675)
	5-229, gnl\|Mm7\|chr17 (27491410-27491619)
	5-229, gnl\|oryCun1\|scaffold_106959 (5091-5809)
	5-229, gnl\|panTro1\|chr5 (37470917-37471656)
	5-229, gnl\|rheMac2\|chr4 (36675272-36676007)
	5-229, gnl\|rn3\|chr20 (7607822-7608431)