Non-Coding RNA Search

Pig2-100D24

Sequence:


               
               GTGCAGCACAAAGCACCTGCTTTACCTCCTCCTCCCTCAGTTCTCCCCCTACAGCCTCCT
ACCTCTATTGACTATCCTCATAACAGCCCCCCTCCGTATGCCCCGAATCTCACGTTCAAG
GGAAGCCTACTTGATTTTGCTTTAAAATGTTCCACTTAGGGAACTCTCTGCGCTGCAGTC
AGCCCTGAGAGAGAGACCCAGAGCCCTTCCCTAGGCACCGAGGAAGGTATGGTTCATACG
AGCAAAGGATAAGAAAAAGGATTGAAGGTTTTTTAGCCTTTCCTCCTTCCTGGGAATCAT
CCTCTTCCCCCATTCCAAGGAAACCTGGGTTGGCTGGGGTGGGGTGGTGGAGGGGGAGAG
TGTNACATAAGGACCACAGATGGCCTGGATGTTTGACCAGGTCCCGGAGAGAAACCAGCT
GGATATGTAAGTCCAAACCCAGCACTCTTGAATTTAAGTTCTGGAGCAAGGTGCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGCAGCACAAAGCACCTGCTTTACCTCCTCCTCCCTCAGTTCTCCCCCTACAGCCTCCT
ACCTCTATTGACTATCCTCATAACAGCCCCCCTCCGTATGCCCCGAATCTCACGTTCAAG
GGAAGCCTACTTGATTTTGCTTTAAAATGTTCCACTTAGGGAACTCTCTGCGCTGCAGTC
AGCCCTGAGAGAGAGACCCAGAGCCCTTCCCTAGGCACCGAGGAAGGTATGGTTCATACG
AGCAAAGGATAAGAAAAAGGATTGAAGGTTTTTTAGCCTTTCCTCCTTCCTGGGAATCAT
CCTCTTCCCCCATTCCAAGGAAACCTGGGTTGGCTGGGGTGGGGTGGTGGAGGGGGAGAG
TGTNACATAAGGACCACAGATGGCCTGGATGTTTGACCAGGTCCCGGAGAGAAACCAGCT
GGATATGTAAGTCCAAACCCAGCACTCTTGAATTTAAGTTCTGGAGCAAGGTGCTC

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               150-254, - strand, RNAz p=0.856448
               

               
               331-430, - strand, RNAz p=0.971652
               

               
               339-476, - strand, RNAz p=0.991387

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               150-254, - strand, RNAz p=0.856448
               

               
               331-430, - strand, RNAz p=0.971652
               

               
               339-476, - strand, RNAz p=0.991387

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               11-476, gnl|bosTau2|chr3 (4956942-4957424)
               

               
               11-476, gnl|canFam2|chr38 (25115263-25114976)
               

               
               11-476, gnl|dasNov1|scaffold_6544 (2039-1691)
               

               
               11-476, gnl|echTel1|scaffold_106661 (408-734)
               

               
               11-476, gnl|hg17|chr1 (156865402-156865729)
               

               
               11-476, gnl|Hg17|chr1 (156865893-156865406)
               

               
               11-476, gnl|mm7|chr1 (172298558-172298203)
               

               
               11-476, gnl|Mm7|chr1 (172298032-172298552)
               

               
               11-476, gnl|monDom2|scaffold_13 (61563681-61563412)
               

               
               11-476, gnl|oryCun1|scaffold_204809 (1578-1299)
               

               
               11-476, gnl|panTro1|chr1 (138950246-138950573)
               

               
               11-476, gnl|rheMac2|chr1 (138705372-138705700)
               

               
               11-476, gnl|rn3|chr13 (88506873-88506525)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               11-476, gnl|bosTau2|chr3 (4956942-4957424)
               

               
               11-476, gnl|canFam2|chr38 (25115263-25114976)
               

               
               11-476, gnl|dasNov1|scaffold_6544 (2039-1691)
               

               
               11-476, gnl|echTel1|scaffold_106661 (408-734)
               

               
               11-476, gnl|hg17|chr1 (156865402-156865729)
               

               
               11-476, gnl|Hg17|chr1 (156865893-156865406)
               

               
               11-476, gnl|mm7|chr1 (172298558-172298203)
               

               
               11-476, gnl|Mm7|chr1 (172298032-172298552)
               

               
               11-476, gnl|monDom2|scaffold_13 (61563681-61563412)
               

               
               11-476, gnl|oryCun1|scaffold_204809 (1578-1299)
               

               
               11-476, gnl|panTro1|chr1 (138950246-138950573)
               

               
               11-476, gnl|rheMac2|chr1 (138705372-138705700)
               

               
               11-476, gnl|rn3|chr13 (88506873-88506525)

	150-254, - strand, RNAz p=0.856448
	331-430, - strand, RNAz p=0.971652
	339-476, - strand, RNAz p=0.991387

	11-476, gnl\|bosTau2\|chr3 (4956942-4957424)
	11-476, gnl\|canFam2\|chr38 (25115263-25114976)
	11-476, gnl\|dasNov1\|scaffold_6544 (2039-1691)
	11-476, gnl\|echTel1\|scaffold_106661 (408-734)
	11-476, gnl\|hg17\|chr1 (156865402-156865729)
	11-476, gnl\|Hg17\|chr1 (156865893-156865406)
	11-476, gnl\|mm7\|chr1 (172298558-172298203)
	11-476, gnl\|Mm7\|chr1 (172298032-172298552)
	11-476, gnl\|monDom2\|scaffold_13 (61563681-61563412)
	11-476, gnl\|oryCun1\|scaffold_204809 (1578-1299)
	11-476, gnl\|panTro1\|chr1 (138950246-138950573)
	11-476, gnl\|rheMac2\|chr1 (138705372-138705700)
	11-476, gnl\|rn3\|chr13 (88506873-88506525)