Non-Coding RNA Search

Pig2-101P20

Sequence:


               
               GCGCCCCGGGGACCCTCCCCTCTTGTCACCATGACACCAGCAGTGCCAGCAGTTACCCCT
GTGGACGAGGAGAGCTCGGATGGGGAGCCAGATCAGGAAGCTGTGCAGAGGTAATGTGAC
ATCTGGCAGTGCTTGCAGAACGTCCTTGGGCAGGCTCCCCCTGCAACCAGCGAAAGGTCA
CCTCTGCCCAAGGAGGTGGTCCAGTGCAGCTTCAACATTTGTGTGGTCTCTTTGCTCAAG
CCAGATGGCATGTTCCTCCCCACATGGAAGTAACAGAAGACTACCCAGAAAATTTCATTT
CTGTAAGCACCATTGGAAGTCCCCTAAGTGACAGCAATAACCATAAGAACTTTTTCTCTC
CTCCCTCCTTCTTCCCTTGCCCCCCTGCCTTCATATTGCAACTCTGATAGTATTCACAAG
GCACAAAGCCTGCTCCTACCTGCCAAGAACTGTTACTGAAAAGGAATTGGAGATCTGGGA
TGACAGTGATCCTAGCTAGTCTGGCCATGGACCGCTGGCATGGACTCTTCCTTTCCAGGA
GAATGAATACCTCTTGTACTGTTTGCTGTGTGCTTCTTCTGTCCCCTTGTATCAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGCCCCGGGGACCCTCCCCTCTTGTCACCATGACACCAGCAGTGCCAGCAGTTACCCCT
GTGGACGAGGAGAGCTCGGATGGGGAGCCAGATCAGGAAGCTGTGCAGAGGTAATGTGAC
ATCTGGCAGTGCTTGCAGAACGTCCTTGGGCAGGCTCCCCCTGCAACCAGCGAAAGGTCA
CCTCTGCCCAAGGAGGTGGTCCAGTGCAGCTTCAACATTTGTGTGGTCTCTTTGCTCAAG
CCAGATGGCATGTTCCTCCCCACATGGAAGTAACAGAAGACTACCCAGAAAATTTCATTT
CTGTAAGCACCATTGGAAGTCCCCTAAGTGACAGCAATAACCATAAGAACTTTTTCTCTC
CTCCCTCCTTCTTCCCTTGCCCCCCTGCCTTCATATTGCAACTCTGATAGTATTCACAAG
GCACAAAGCCTGCTCCTACCTGCCAAGAACTGTTACTGAAAAGGAATTGGAGATCTGGGA
TGACAGTGATCCTAGCTAGTCTGGCCATGGACCGCTGGCATGGACTCTTCCTTTCCAGGA
GAATGAATACCTCTTGTACTGTTTGCTGTGTGCTTCTTCTGTCCCCTTGTATCAAC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               79-318, - strand, RNAz p=0.900007
               

               
               359-589, - strand, RNAz p=0.729429

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               79-318, - strand, RNAz p=0.900007
               

               
               359-589, - strand, RNAz p=0.729429

Predicted microRNA(s): 2 entry(ies)

More info

Predicted microRNA(s): 2 entry(ies)

Help | Less info


               
               448-580, - strand, RNAmicro p=0.996173
               

               
               110-222, - strand, RNAmicro p=0.946688

Predicted microRNA(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               448-580, - strand, RNAmicro p=0.996173
               

               
               110-222, - strand, RNAmicro p=0.946688

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               40-596, gnl|bosTau2|chr15 (13156531-13157084)
               

               
               40-596, gnl|Hg17|chr11 (116246327-116245774)
               

               
               40-596, gnl|Mm7|chr9 (46160123-46160681)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               40-596, gnl|bosTau2|chr15 (13156531-13157084)
               

               
               40-596, gnl|Hg17|chr11 (116246327-116245774)
               

               
               40-596, gnl|Mm7|chr9 (46160123-46160681)

	79-318, - strand, RNAz p=0.900007
	359-589, - strand, RNAz p=0.729429

	448-580, - strand, RNAmicro p=0.996173
	110-222, - strand, RNAmicro p=0.946688

	40-596, gnl\|bosTau2\|chr15 (13156531-13157084)
	40-596, gnl\|Hg17\|chr11 (116246327-116245774)
	40-596, gnl\|Mm7\|chr9 (46160123-46160681)